Difference between revisions of "TSS:Mm 1807.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Jr6= | |Jr6= | ||
|Kiaa1486= | |Kiaa1486= | ||
| − | |all_trans=ENSMUST00000068275.11 | + | |all_trans=NM_001356400:43 ENSMUST00000068275.11:52 BC082310:52 ENSMUST00000123720.7:-53 NM_001356398:-53 AK034747:-53 ENSMUST00000113494.8:59 AK137094:59 NM_001356397:142 ENSMUST00000137862.7:-307 NM_001356399:-307 AK049778:-307 ENSMUST00000123285.1:318 AK043512:318 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=43 |
| − | |distance_to_tss=- | + | |distance_to_tss=-47 |
|end=81077265 | |end=81077265 | ||
|end_of_center_position=81077261 | |end_of_center_position=81077261 | ||
|entrez_id=241134 | |entrez_id=241134 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=9430031J16Rik | + | |gene_alias=9430031J16Rik{{!}}Jr6{{!}}Kiaa1486 |
|gene_description=neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 | |gene_description=neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 | ||
|gene_id=241134 | |gene_id=241134 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:2443135 | |hgnc_mgi_id=MGI:2443135 | ||
|nearest_ensembl=ENSMUSG00000054976 | |nearest_ensembl=ENSMUSG00000054976 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001356400 |
|nearest_refseq=NM_172849 | |nearest_refseq=NM_172849 | ||
|nearest_unigene=Mm.313904 | |nearest_unigene=Mm.313904 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=81077256 | |start=81077256 | ||
|start_of_center_position=81077260 | |start_of_center_position=81077260 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001356400 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_1807.1 | |tss_id=mm_1807.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 20:48, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 81077260 |
|---|---|
| End of the center position in the TSS region: | 81077261 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001356400 |
|---|---|
| Distance: | 43 |
| Num_trans: | 14 |
| All_trans: | NM_001356400:43 ENSMUST00000068275.11:52 BC082310:52 ENSMUST00000123720.7:-53 NM_001356398:-53 AK034747:-53 ENSMUST00000113494.8:59 AK137094:59 NM_001356397:142 ENSMUST00000137862.7:-307 NM_001356399:-307 AK049778:-307 ENSMUST00000123285.1:318 AK043512:318 |
TATA-Box annotation
| Distance to TSS: | -47 |
|---|---|
| Nearest PromoterID: | NM_001356400 |
| Entrez ID: | 241134 |
| Nearest Unigene: | Mm.313904 |
| Nearest Refseq: | NM_172849 |
| Nearest Ensembl: | ENSMUSG00000054976 |
| Gene Name: | neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 |
| Gene Alias: | 9430031J16Rik|Jr6|Kiaa1486 |
| Gene Description: | neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
