Difference between revisions of "TSS:Mm 87039.1"
From referenceTSS
| Line 12: | Line 12: | ||
|entrez_id=210757 | |entrez_id=210757 | ||
|gc_percent=0.313433 | |gc_percent=0.313433 | ||
| − | |gene_alias=E430004N04Rik | + | |gene_alias=E430004N04Rik{{!}}Gasp{{!}}Spot{{!}}Tsepa{{!}}thylex |
|gene_description=thymocyte selection associated | |gene_description=thymocyte selection associated | ||
|gene_id=103514 | |gene_id=103514 | ||
|gene_name=expressed sequence BB165335 | |gene_name=expressed sequence BB165335 | ||
| − | |gene_source= | + | |gene_source=EntrezGene:103514 |
|gene_symbol=BB165335 | |gene_symbol=BB165335 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id= |
|nearest_ensembl=ENSMUSG00000049109 | |nearest_ensembl=ENSMUSG00000049109 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_131208 |
|nearest_refseq=NM_178666 | |nearest_refseq=NM_178666 | ||
|nearest_unigene=Mm.123021 | |nearest_unigene=Mm.123021 | ||
| Line 30: | Line 30: | ||
|start_of_center_position=28730816 | |start_of_center_position=28730816 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=46(CTTTTTAAAAAG,+,0.00),46(CTTTTTAAAAAG,-,0.00) |
|thylex= | |thylex= | ||
|transcript_name=AK138679 | |transcript_name=AK138679 | ||
Revision as of 23:11, 21 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 28730816 |
|---|---|
| End of the center position in the TSS region: | 28730817 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK138679 |
|---|---|
| Distance: | -454 |
| Num_trans: | 1 |
| All_trans: | AK138679:-454 |
TATA-Box annotation
| Distance to TSS: | 62456 |
|---|---|
| Nearest PromoterID: | NR_131208 |
| Entrez ID: | 210757 |
| Nearest Unigene: | Mm.123021 |
| Nearest Refseq: | NM_178666 |
| Nearest Ensembl: | ENSMUSG00000049109 |
| Gene Name: | expressed sequence BB165335 |
| Gene Alias: | E430004N04Rik|Gasp|Spot|Tsepa|thylex |
| Gene Description: | thymocyte selection associated |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.313433 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 46(CTTTTTAAAAAG,+,0.00),46(CTTTTTAAAAAG,-,0.00) |
