Difference between revisions of "TSS:Mm 99314.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|D930024B17= | |D930024B17= | ||
| − | |all_trans=ENSMUST00000040561.5:0 NM_172566 | + | |all_trans=ENSMUST00000040561.5:0 NM_172566:0 BC119592:0 BC119593:0 AK086362:0 AK157156:0 AK199105:34 AK199315:34 AK198782:482 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 10: | Line 10: | ||
|entrez_id=217201 | |entrez_id=217201 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=AW125546 | + | |gene_alias=AW125546{{!}}D930024B17 |
|gene_description=RUN domain containing 1 | |gene_description=RUN domain containing 1 | ||
|gene_id=217201 | |gene_id=217201 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_172566 | |nearest_refseq=NM_172566 | ||
|nearest_unigene=Mm.305941 | |nearest_unigene=Mm.305941 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=101425068 | |start=101425068 | ||
|start_of_center_position=101425091 | |start_of_center_position=101425091 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000040561.5 NM_172566 | + | |transcript_name=ENSMUST00000040561.5 NM_172566 BC119592 BC119593 AK086362 AK157156 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99314.1 | |tss_id=mm_99314.1 | ||
Revision as of 03:48, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 101425091 |
|---|---|
| End of the center position in the TSS region: | 101425092 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000040561.5 NM_172566 BC119592 BC119593 AK086362 AK157156 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000040561.5:0 NM_172566:0 BC119592:0 BC119593:0 AK086362:0 AK157156:0 AK199105:34 AK199315:34 AK198782:482 |
TATA-Box annotation
| Distance to TSS: | 6 |
|---|---|
| Nearest PromoterID: | NM_172566 |
| Entrez ID: | 217201 |
| Nearest Unigene: | Mm.305941 |
| Nearest Refseq: | NM_172566 |
| Nearest Ensembl: | ENSMUSG00000035007 |
| Gene Name: | RUN domain containing 1 |
| Gene Alias: | AW125546|D930024B17 |
| Gene Description: | RUN domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
