Difference between revisions of "TSS:Mm 99470.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK185467:-38 AK217383:416 | + | |all_trans=AK185467:-38 LF230900:272 MA466477:272 LF230899:-365 MA466476:-365 LF230901:406 MA466478:406 AK217383:416 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=-38 | |distance=-38 | ||
| − | |distance_to_tss= | + | |distance_to_tss=5618 |
|end=102436150 | |end=102436150 | ||
|end_of_center_position=102436125 | |end_of_center_position=102436125 | ||
| Line 10: | Line 10: | ||
|epithelin= | |epithelin= | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=Pgrn | + | |gene_alias=GP88{{!}}PCDGF{{!}}PEPI{{!}}Pgrn{{!}}epithelin |
|gene_description=granulin | |gene_description=granulin | ||
|gene_id=14824 | |gene_id=14824 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_008175 | |nearest_refseq=NM_008175 | ||
|nearest_unigene=Mm.1568 | |nearest_unigene=Mm.1568 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=102436099 | |start=102436099 | ||
Revision as of 03:52, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102436124 |
|---|---|
| End of the center position in the TSS region: | 102436125 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK185467 |
|---|---|
| Distance: | -38 |
| Num_trans: | 8 |
| All_trans: | AK185467:-38 LF230900:272 MA466477:272 LF230899:-365 MA466476:-365 LF230901:406 MA466478:406 AK217383:416 |
TATA-Box annotation
| Distance to TSS: | 5618 |
|---|---|
| Nearest PromoterID: | NM_008175 |
| Entrez ID: | 14824 |
| Nearest Unigene: | Mm.1568 |
| Nearest Refseq: | NM_008175 |
| Nearest Ensembl: | ENSMUSG00000034708 |
| Gene Name: | granulin |
| Gene Alias: | GP88|PCDGF|PEPI|Pgrn|epithelin |
| Gene Description: | granulin |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
