Difference between revisions of "TSS:Mm 99580.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Mtapt= | |Mtapt= | ||
|Tau= | |Tau= | ||
| − | |all_trans=ENSMUST00000138384.7:0 ENSMUST00000145227.7:0 AK038797:0 AK147636:0 BC014748:0 AK078167:-3 ENSMUST00000106993.9:8 | + | |all_trans=ENSMUST00000138384.7:0 ENSMUST00000145227.7:0 AK038797:0 AK147636:0 BC014748:0 AK078167:-3 ENSMUST00000106993.9:8 NM_001285455:-30 NM_001285454:-30 NM_001285456:-30 NM_010838:-30 NM_001038609:-30 M18775:-30 M18776:-30 U12914:45 U12915:45 U12916:45 ENSMUST00000132977.7:66 ENSMUST00000146353.1:72 ENSMUST00000132245.7:74 ENSMUST00000106992.9:-76 ENSMUST00000100347.10:77 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 12: | Line 12: | ||
|entrez_id=17762 | |entrez_id=17762 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=AI413597 | + | |gene_alias=AI413597{{!}}AW045860{{!}}Mtapt{{!}}Tau |
|gene_description=microtubule-associated protein tau | |gene_description=microtubule-associated protein tau | ||
|gene_id=17762 | |gene_id=17762 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:97180 | |hgnc_mgi_id=MGI:97180 | ||
|nearest_ensembl=ENSMUSG00000018411 | |nearest_ensembl=ENSMUSG00000018411 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001285456 |
|nearest_refseq=NM_010838 | |nearest_refseq=NM_010838 | ||
|nearest_unigene=Mm.1287 | |nearest_unigene=Mm.1287 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=104231465 | |start=104231465 | ||
Revision as of 03:54, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 104231486 |
|---|---|
| End of the center position in the TSS region: | 104231487 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000138384.7 ENSMUST00000145227.7 AK038797 AK147636 BC014748 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000138384.7:0 ENSMUST00000145227.7:0 AK038797:0 AK147636:0 BC014748:0 AK078167:-3 ENSMUST00000106993.9:8 NM_001285455:-30 NM_001285454:-30 NM_001285456:-30 NM_010838:-30 NM_001038609:-30 M18775:-30 M18776:-30 U12914:45 U12915:45 U12916:45 ENSMUST00000132977.7:66 ENSMUST00000146353.1:72 ENSMUST00000132245.7:74 ENSMUST00000106992.9:-76 ENSMUST00000100347.10:77 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NM_001285456 |
| Entrez ID: | 17762 |
| Nearest Unigene: | Mm.1287 |
| Nearest Refseq: | NM_010838 |
| Nearest Ensembl: | ENSMUSG00000018411 |
| Gene Name: | microtubule-associated protein tau |
| Gene Alias: | AI413597|AW045860|Mtapt|Tau |
| Gene Description: | microtubule-associated protein tau |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
