Difference between revisions of "TSS:Mm 99632.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PKUalpha= | |PKUalpha= | ||
|Tlk= | |Tlk= | ||
| − | |all_trans=ENSMUST00000106939.8:70 NM_001294331 | + | |all_trans=ENSMUST00000106939.8:70 NM_001294331:70 AF045252:70 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 12: | Line 12: | ||
|entrez_id=24086 | |entrez_id=24086 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=4933403M19Rik | + | |gene_alias=4933403M19Rik{{!}}PKU-alpha{{!}}PKUalpha{{!}}Tlk |
|gene_description=tousled-like kinase 2 (Arabidopsis) | |gene_description=tousled-like kinase 2 (Arabidopsis) | ||
|gene_id=24086 | |gene_id=24086 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_011903 | |nearest_refseq=NM_011903 | ||
|nearest_unigene=Mm.126976 | |nearest_unigene=Mm.126976 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=105178720 | |start=105178720 | ||
|start_of_center_position=105178728 | |start_of_center_position=105178728 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-89(GGCCCTTTAAAG,-,0.00),-88(GCCCTTTAAAGG,-,0.00),-87(CCCTTTAAAGGA,+,0.00),-87(CCCTTTAAAGGA,-,0.00),-86(CCTTTAAAGGAT,+,0.00) |
| − | |transcript_name=ENSMUST00000106939.8 NM_001294331 | + | |transcript_name=ENSMUST00000106939.8 NM_001294331 AF045252 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_99632.1 | |tss_id=mm_99632.1 | ||
Revision as of 03:55, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 105178728 |
|---|---|
| End of the center position in the TSS region: | 105178729 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000106939.8 NM_001294331 AF045252 |
|---|---|
| Distance: | 70 |
| Num_trans: | 3 |
| All_trans: | ENSMUST00000106939.8:70 NM_001294331:70 AF045252:70 |
TATA-Box annotation
| Distance to TSS: | -78 |
|---|---|
| Nearest PromoterID: | NM_001294331 |
| Entrez ID: | 24086 |
| Nearest Unigene: | Mm.126976 |
| Nearest Refseq: | NM_011903 |
| Nearest Ensembl: | ENSMUSG00000020694 |
| Gene Name: | tousled-like kinase 2 (Arabidopsis) |
| Gene Alias: | 4933403M19Rik|PKU-alpha|PKUalpha|Tlk |
| Gene Description: | tousled-like kinase 2 (Arabidopsis) |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -89(GGCCCTTTAAAG,-,0.00),-88(GCCCTTTAAAGG,-,0.00),-87(CCCTTTAAAGGA,+,0.00),-87(CCCTTTAAAGGA,-,0.00),-86(CCTTTAAAGGAT,+,0.00) |
