Difference between revisions of "TSS:Mm 99705.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AI413966= | |AI413966= | ||
| − | |all_trans=AK131734:-254 | + | |all_trans=ENSMUST00000238639.1:-101 AK131734:-254 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance=- | + | |distance=-101 |
| − | |distance_to_tss=- | + | |distance_to_tss=-130 |
|end=106160319 | |end=106160319 | ||
|end_of_center_position=106160307 | |end_of_center_position=106160307 | ||
|entrez_id=67803 | |entrez_id=67803 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=0610025L06Rik | + | |gene_alias=0610025L06Rik{{!}}AI413966 |
|gene_description=LIM domain containing 2 | |gene_description=LIM domain containing 2 | ||
| − | |gene_id= | + | |gene_id= |
|gene_name=predicted gene 10840 | |gene_name=predicted gene 10840 | ||
|gene_source=MGI:3642918 | |gene_source=MGI:3642918 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_172397 | |nearest_refseq=NM_172397 | ||
|nearest_unigene=Mm.21687 | |nearest_unigene=Mm.21687 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=106160293 | |start=106160293 | ||
|start_of_center_position=106160306 | |start_of_center_position=106160306 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000238639.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_99705.1 | |tss_id=mm_99705.1 | ||
Revision as of 03:57, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106160306 |
|---|---|
| End of the center position in the TSS region: | 106160307 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000238639.1 |
|---|---|
| Distance: | -101 |
| Num_trans: | 2 |
| All_trans: | ENSMUST00000238639.1:-101 AK131734:-254 |
TATA-Box annotation
| Distance to TSS: | -130 |
|---|---|
| Nearest PromoterID: | NM_172397 |
| Entrez ID: | 67803 |
| Nearest Unigene: | Mm.21687 |
| Nearest Refseq: | NM_172397 |
| Nearest Ensembl: | ENSMUSG00000040699 |
| Gene Name: | predicted gene 10840 |
| Gene Alias: | 0610025L06Rik|AI413966 |
| Gene Description: | LIM domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
