Difference between revisions of "TSS:Mm 99707.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|C88307= | |C88307= | ||
| − | |all_trans=ENSMUST00000021046.5:394 NM_028074:394 | + | |all_trans=LF198949:-45 MA434526:-45 LF231151:68 MA466728:68 ENSMUST00000021046.5:394 NM_001361643:394 NM_028074:394 AK049311:394 LF231152:422 MA466729:422 AK169816:449 AK021013:485 |
|asp4= | |asp4= | ||
|calumin= | |calumin= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| − | |distance= | + | |distance=-45 |
|distance_to_tss=-158 | |distance_to_tss=-158 | ||
|end=106216532 | |end=106216532 | ||
| Line 12: | Line 12: | ||
|entrez_id=67163 | |entrez_id=67163 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=2610204L23Rik | + | |gene_alias=2610204L23Rik{{!}}C88307{{!}}asp4{{!}}calumin |
|gene_description=coiled-coil domain containing 47 | |gene_description=coiled-coil domain containing 47 | ||
|gene_id=72047 | |gene_id=72047 | ||
| − | |gene_name= | + | |gene_name=Ccdc47 |
|gene_source=MGI:1919297 | |gene_source=MGI:1919297 | ||
|gene_symbol=Ddx42 | |gene_symbol=Ddx42 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_026009 | |nearest_refseq=NM_026009 | ||
|nearest_unigene=Mm.22109 | |nearest_unigene=Mm.22109 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=106216518 | |start=106216518 | ||
|start_of_center_position=106216525 | |start_of_center_position=106216525 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF198949 MA434526 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99707.1 | |tss_id=mm_99707.1 | ||
Latest revision as of 03:57, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106216525 |
|---|---|
| End of the center position in the TSS region: | 106216526 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198949 MA434526 |
|---|---|
| Distance: | -45 |
| Num_trans: | 12 |
| All_trans: | LF198949:-45 MA434526:-45 LF231151:68 MA466728:68 ENSMUST00000021046.5:394 NM_001361643:394 NM_028074:394 AK049311:394 LF231152:422 MA466729:422 AK169816:449 AK021013:485 |
TATA-Box annotation
| Distance to TSS: | -158 |
|---|---|
| Nearest PromoterID: | NM_026009 |
| Entrez ID: | 67163 |
| Nearest Unigene: | Mm.22109 |
| Nearest Refseq: | NM_026009 |
| Nearest Ensembl: | ENSMUSG00000078622 |
| Gene Name: | Ccdc47 |
| Gene Alias: | 2610204L23Rik|C88307|asp4|calumin |
| Gene Description: | coiled-coil domain containing 47 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
