Difference between revisions of "TSS:Mm 99743.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=DQ711996:66 DQ540861:111 DQ540862:111 | + | |all_trans=NR_168513:0 LF198954:-19 MA434531:-19 DQ711996:66 LF231202:95 MA466779:95 DQ540861:111 DQ540862:111 LF231203:247 MA466780:247 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=-74 | |distance_to_tss=-74 | ||
|end=106500925 | |end=106500925 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=small nucleolar RNA, C/D box 104 |
| − | |gene_name= | + | |gene_id=102640063 |
| + | |gene_name=predicted gene, 36220 | ||
| + | |gene_source=MGI:5595379 | ||
| + | |gene_symbol=Gm36220 | ||
| + | |gene_synonyms= | ||
|gene_type=snoRNA | |gene_type=snoRNA | ||
| + | |hgnc_mgi_id=MGI:5595379 | ||
|nearest_ensembl=ENSMUSG00000065126 | |nearest_ensembl=ENSMUSG00000065126 | ||
|nearest_promoter_id=NR_030703 | |nearest_promoter_id=NR_030703 | ||
|nearest_refseq=NR_030703 | |nearest_refseq=NR_030703 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=106500908 | |start=106500908 | ||
|start_of_center_position=106500916 | |start_of_center_position=106500916 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_168513 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99743.1 | |tss_id=mm_99743.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 03:58, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106500916 |
|---|---|
| End of the center position in the TSS region: | 106500917 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_168513 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | NR_168513:0 LF198954:-19 MA434531:-19 DQ711996:66 LF231202:95 MA466779:95 DQ540861:111 DQ540862:111 LF231203:247 MA466780:247 |
TATA-Box annotation
| Distance to TSS: | -74 |
|---|---|
| Nearest PromoterID: | NR_030703 |
| Entrez ID: | 100216537 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030703 |
| Nearest Ensembl: | ENSMUSG00000065126 |
| Gene Name: | predicted gene, 36220 |
| Gene Alias: | - |
| Gene Description: | small nucleolar RNA, C/D box 104 |
| Gene Type: | snoRNA |
| CpG%: | 0.05 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
