Difference between revisions of "TSS:Mm 99757.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Gm885= | |Gm885= | ||
|Mca32= | |Mca32= | ||
| − | |all_trans=AK153506:-289 AK151814:-341 AK170947:-341 ENSMUST00000106794.8:-342 ENSMUST00000182023.1:-342 AB542953:-342 AK136488:-342 AK171381:-342 AK137500:-342 ENSMUST00000183111.7:-345 AK169925:-345 ENSMUST00000182896.7:-370 ENSMUST00000182908.7:-370 ENSMUST00000086353.10:-370 BC139224:-370 BC139225:-370 BC145580:-370 BC145582:-370 ENSMUST00000147326.8:-384 | + | |all_trans=AK153506:-289 AK151814:-341 AK170947:-341 ENSMUST00000106794.8:-342 ENSMUST00000182023.1:-342 AB542953:-342 AK136488:-342 AK171381:-342 AK137500:-342 ENSMUST00000183111.7:-345 AK169925:-345 ENSMUST00000182896.7:-370 ENSMUST00000182908.7:-370 ENSMUST00000086353.10:-370 BC139224:-370 BC139225:-370 BC145580:-370 BC145582:-370 ENSMUST00000147326.8:-384 NM_001271373:-384 NM_001271372:-384 NM_001271374:-384 NM_001271375:-384 NM_001033435:-384 NR_073165:-384 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 11: | Line 11: | ||
|entrez_id=380732 | |entrez_id=380732 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
| − | |gene_alias=Allergin-1 | + | |gene_alias=Allergin-1{{!}}Gm885{{!}}Mca32 |
|gene_description=mast cell immunoglobulin like receptor 1 | |gene_description=mast cell immunoglobulin like receptor 1 | ||
|gene_id=380732 | |gene_id=380732 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:2685731 | |hgnc_mgi_id=MGI:2685731 | ||
|nearest_ensembl=ENSMUSG00000040528 | |nearest_ensembl=ENSMUSG00000040528 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_073165 |
|nearest_refseq=NM_001033435 | |nearest_refseq=NM_001033435 | ||
|nearest_unigene=Mm.343952 | |nearest_unigene=Mm.343952 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=mouse | |species=mouse | ||
|start=106751609 | |start=106751609 | ||
Revision as of 03:58, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106751628 |
|---|---|
| End of the center position in the TSS region: | 106751629 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK153506 |
|---|---|
| Distance: | -289 |
| Num_trans: | 25 |
| All_trans: | AK153506:-289 AK151814:-341 AK170947:-341 ENSMUST00000106794.8:-342 ENSMUST00000182023.1:-342 AB542953:-342 AK136488:-342 AK171381:-342 AK137500:-342 ENSMUST00000183111.7:-345 AK169925:-345 ENSMUST00000182896.7:-370 ENSMUST00000182908.7:-370 ENSMUST00000086353.10:-370 BC139224:-370 BC139225:-370 BC145580:-370 BC145582:-370 ENSMUST00000147326.8:-384 NM_001271373:-384 NM_001271372:-384 NM_001271374:-384 NM_001271375:-384 NM_001033435:-384 NR_073165:-384 |
TATA-Box annotation
| Distance to TSS: | 402 |
|---|---|
| Nearest PromoterID: | NR_073165 |
| Entrez ID: | 380732 |
| Nearest Unigene: | Mm.343952 |
| Nearest Refseq: | NM_001033435 |
| Nearest Ensembl: | ENSMUSG00000040528 |
| Gene Name: | mast cell immunoglobulin like receptor 1 |
| Gene Alias: | Allergin-1|Gm885|Mca32 |
| Gene Description: | mast cell immunoglobulin like receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
