Difference between revisions of "TSS:Mm 99788.1"
From referenceTSS
| Line 7: | Line 7: | ||
|RDGBB= | |RDGBB= | ||
|RDGBB1= | |RDGBB1= | ||
| − | |all_trans=ENSMUST00000136927 | + | |all_trans=NR_168694:9 ENSMUST00000136927.1:35 AK146139:35 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=9 |
|distance_to_tss=42484 | |distance_to_tss=42484 | ||
|end=107428241 | |end=107428241 | ||
| Line 16: | Line 16: | ||
|entrez_id=71795 | |entrez_id=71795 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=1110020B03Rik | + | |gene_alias=1110020B03Rik{{!}}5830436L09Rik{{!}}AI662802{{!}}AI851387{{!}}C330017I21Rik{{!}}Dnr411{{!}}RDGBB{{!}}RDGBB1{{!}}mrdgBbeta{{!}}rdgB-beta |
| − | |gene_description= | + | |gene_description=phosphatidylinositol transfer protein, cytoplasmic 1 |
| − | |gene_id= | + | |gene_id=108167930 |
|gene_name=predicted gene 11714 | |gene_name=predicted gene 11714 | ||
|gene_source=MGI:3649214 | |gene_source=MGI:3649214 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=MGI:3649214 | |hgnc_mgi_id=MGI:3649214 | ||
|nearest_ensembl=ENSMUSG00000040430 | |nearest_ensembl=ENSMUSG00000040430 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359616 |
|nearest_refseq=NM_145823 | |nearest_refseq=NM_145823 | ||
|nearest_unigene=Mm.397413 | |nearest_unigene=Mm.397413 | ||
| Line 35: | Line 35: | ||
|start_of_center_position=107428236 | |start_of_center_position=107428236 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_168694 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99788.1 | |tss_id=mm_99788.1 | ||
Revision as of 03:59, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 107428236 |
|---|---|
| End of the center position in the TSS region: | 107428237 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_168694 |
|---|---|
| Distance: | 9 |
| Num_trans: | 3 |
| All_trans: | NR_168694:9 ENSMUST00000136927.1:35 AK146139:35 |
TATA-Box annotation
| Distance to TSS: | 42484 |
|---|---|
| Nearest PromoterID: | NM_001359616 |
| Entrez ID: | 71795 |
| Nearest Unigene: | Mm.397413 |
| Nearest Refseq: | NM_145823 |
| Nearest Ensembl: | ENSMUSG00000040430 |
| Gene Name: | predicted gene 11714 |
| Gene Alias: | 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta |
| Gene Description: | phosphatidylinositol transfer protein, cytoplasmic 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
