Difference between revisions of "TSS:Mm 99799.1"
From referenceTSS
| Line 4: | Line 4: | ||
|AI851979= | |AI851979= | ||
|DRHC= | |DRHC= | ||
| − | |all_trans=ENSMUST00000141730.7:0 ENSMUST00000100305.7:0 AB093209:0 ENSMUST00000075012.7 | + | |all_trans=ENSMUST00000141730.7:0 ENSMUST00000100305.7:0 NM_001368755:0 NM_198298:0 AB093209:0 ENSMUST00000075012.7:1 BC076626:1 ENSMUST00000106746.7:9 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9 |
|end=107547959 | |end=107547959 | ||
|end_of_center_position=107547943 | |end_of_center_position=107547943 | ||
|entrez_id=78455 | |entrez_id=78455 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=3110078M01Rik | + | |gene_alias=3110078M01Rik{{!}}9430093I07Rik{{!}}9630002H22Rik{{!}}AI851979{{!}}DRHC |
|gene_description=helicase with zinc finger domain | |gene_description=helicase with zinc finger domain | ||
|gene_id=78455 | |gene_id=78455 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=MGI:1925705 | |hgnc_mgi_id=MGI:1925705 | ||
|nearest_ensembl=ENSMUSG00000020721 | |nearest_ensembl=ENSMUSG00000020721 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368755 |
|nearest_refseq=NM_198298 | |nearest_refseq=NM_198298 | ||
|nearest_unigene=Mm.272047 | |nearest_unigene=Mm.272047 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=107547925 | |start=107547925 | ||
|start_of_center_position=107547942 | |start_of_center_position=107547942 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-43(CACTTTAAAGGC,-,0.00) |
| − | |transcript_name=ENSMUST00000141730.7 ENSMUST00000100305.7 AB093209 | + | |transcript_name=ENSMUST00000141730.7 ENSMUST00000100305.7 NM_001368755 NM_198298 AB093209 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99799.1 | |tss_id=mm_99799.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q6DFV5 |
}} | }} | ||
Revision as of 03:59, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 107547942 |
|---|---|
| End of the center position in the TSS region: | 107547943 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000141730.7 ENSMUST00000100305.7 NM_001368755 NM_198298 AB093209 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENSMUST00000141730.7:0 ENSMUST00000100305.7:0 NM_001368755:0 NM_198298:0 AB093209:0 ENSMUST00000075012.7:1 BC076626:1 ENSMUST00000106746.7:9 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_001368755 |
| Entrez ID: | 78455 |
| Nearest Unigene: | Mm.272047 |
| Nearest Refseq: | NM_198298 |
| Nearest Ensembl: | ENSMUSG00000020721 |
| Gene Name: | helicase with zinc finger domain |
| Gene Alias: | 3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC |
| Gene Description: | helicase with zinc finger domain |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(CACTTTAAAGGC,-,0.00) |
