Difference between revisions of "TSS:Mm 99824.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Axil= | |Axil= | ||
|Conductin= | |Conductin= | ||
| − | |all_trans=BC057338:-6 ENSMUST00000052915.13:-23 NM_015732 | + | |all_trans=BC057338:-6 ENSMUST00000052915.13:-23 NM_015732:-23 AK142333:-23 AK049192:23 AF073788:100 ENSMUST00000140821.1:416 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 11: | Line 11: | ||
|entrez_id=12006 | |entrez_id=12006 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=Axi1 | + | |gene_alias=Axi1{{!}}Axil{{!}}Conductin |
|gene_description=axin 2 | |gene_description=axin 2 | ||
|gene_id=12006 | |gene_id=12006 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_015732 | |nearest_refseq=NM_015732 | ||
|nearest_unigene=Mm.71710 | |nearest_unigene=Mm.71710 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=108920371 | |start=108920371 | ||
|start_of_center_position=108920377 | |start_of_center_position=108920377 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-62(GTCCCTTTAAGG,-,0.00),-60(CCCTTTAAGGCG,+,0.00),-59(CCTTTAAGGCGG,+,0.00) |
|transcript_name=BC057338 | |transcript_name=BC057338 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 04:00, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 108920377 |
|---|---|
| End of the center position in the TSS region: | 108920378 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC057338 |
|---|---|
| Distance: | -6 |
| Num_trans: | 7 |
| All_trans: | BC057338:-6 ENSMUST00000052915.13:-23 NM_015732:-23 AK142333:-23 AK049192:23 AF073788:100 ENSMUST00000140821.1:416 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_015732 |
| Entrez ID: | 12006 |
| Nearest Unigene: | Mm.71710 |
| Nearest Refseq: | NM_015732 |
| Nearest Ensembl: | ENSMUSG00000000142 |
| Gene Name: | axin 2 |
| Gene Alias: | Axi1|Axil|Conductin |
| Gene Description: | axin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(GTCCCTTTAAGG,-,0.00),-60(CCCTTTAAGGCG,+,0.00),-59(CCTTTAAGGCGG,+,0.00) |
