Difference between revisions of "TSS:Mm 99895.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Tse-1= | |Tse-1= | ||
|Tse1= | |Tse1= | ||
| − | |all_trans=ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 | + | |all_trans=ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 HQ412666:0 HQ412667:0 NM_001313973:-14 NM_001313974:-14 NM_021880:-354 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=44 |
|end=109649437 | |end=109649437 | ||
|end_of_center_position=109649407 | |end_of_center_position=109649407 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik{{!}}RIalpha{{!}}Tse-1{{!}}Tse1 |
| − | |gene_description= | + | |gene_description=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_id=19084 | |gene_id=19084 | ||
| − | |gene_name= | + | |gene_name=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_source=MGI:104878 | |gene_source=MGI:104878 | ||
|gene_symbol=Prkar1a | |gene_symbol=Prkar1a | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_021880 | |nearest_refseq=NM_021880 | ||
|nearest_unigene=Mm.30039 | |nearest_unigene=Mm.30039 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=109649376 | |start=109649376 | ||
|start_of_center_position=109649406 | |start_of_center_position=109649406 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000123354.7 ENSMUST00000106677.7 | + | |transcript_name=ENSMUST00000123354.7 ENSMUST00000106677.7 HQ412666 HQ412667 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_99895.1 | |tss_id=mm_99895.1 | ||
Revision as of 04:01, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109649406 |
|---|---|
| End of the center position in the TSS region: | 109649407 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000123354.7 ENSMUST00000106677.7 HQ412666 HQ412667 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000123354.7:0 ENSMUST00000106677.7:0 HQ412666:0 HQ412667:0 NM_001313973:-14 NM_001313974:-14 NM_021880:-354 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001313974 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Alias: | 1300018C22Rik|RIalpha|Tse-1|Tse1 |
| Gene Description: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
