Difference between revisions of "TSS:Mm 99900.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Tse-1= | |Tse-1= | ||
|Tse1= | |Tse1= | ||
| − | |all_trans=BC003461:-140 AK145860:-148 AK027916:-148 AK083383:-161 AK147188:-169 | + | |all_trans=BC003461:-140 AK145860:-148 AK027916:-148 AK083383:-161 AK147188:-169 NM_001373913:-181 AK005039:-181 AK053918:-181 AK145797:-181 AK051068:-181 NM_001362677:182 ENSMUST00000049527.6:-209 NM_001313976:-268 NM_001313975:-268 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=-140 | |distance=-140 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-197 |
|end=109651160 | |end=109651160 | ||
|end_of_center_position=109651145 | |end_of_center_position=109651145 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik{{!}}RIalpha{{!}}Tse-1{{!}}Tse1 |
| − | |gene_description= | + | |gene_description=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_id=19084 | |gene_id=19084 | ||
| − | |gene_name= | + | |gene_name=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_source=MGI:104878 | |gene_source=MGI:104878 | ||
|gene_symbol=Prkar1a | |gene_symbol=Prkar1a | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:104878 | |hgnc_mgi_id=MGI:104878 | ||
|nearest_ensembl=ENSMUSG00000020612 | |nearest_ensembl=ENSMUSG00000020612 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362677 |
|nearest_refseq=NM_021880 | |nearest_refseq=NM_021880 | ||
|nearest_unigene=Mm.30039 | |nearest_unigene=Mm.30039 | ||
Revision as of 04:02, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109651144 |
|---|---|
| End of the center position in the TSS region: | 109651145 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC003461 |
|---|---|
| Distance: | -140 |
| Num_trans: | 14 |
| All_trans: | BC003461:-140 AK145860:-148 AK027916:-148 AK083383:-161 AK147188:-169 NM_001373913:-181 AK005039:-181 AK053918:-181 AK145797:-181 AK051068:-181 NM_001362677:182 ENSMUST00000049527.6:-209 NM_001313976:-268 NM_001313975:-268 |
TATA-Box annotation
| Distance to TSS: | -197 |
|---|---|
| Nearest PromoterID: | NM_001362677 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Alias: | 1300018C22Rik|RIalpha|Tse-1|Tse1 |
| Gene Description: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
