Difference between revisions of "TSS:Mm 99981.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Ts= | |Ts= | ||
|Tss= | |Tss= | ||
| − | |all_trans=AK002659:0 AK010518:0 AK012391:0 BC055346:0 BC034339:0 AK010277:0 AK151517:0 ENSMUST00000106599.7:2 BC047046:10 ENSMUST00000082092.4:19 ENSMUST00000077915.9:-23 | + | |all_trans=NM_001048058:0 NM_001048057:0 NM_001362918:0 NM_023372:0 AK002659:0 AK010518:0 AK012391:0 BC055346:0 BC034339:0 AK010277:0 AK151517:0 ENSMUST00000106599.7:2 BC047046:10 ENSMUST00000082092.4:19 ENSMUST00000077915.9:-23 ENSMUST00000106602.9:-47 AB037665:-47 BC094258:174 BC094644:174 BC081447:190 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9 |
|end=114668607 | |end=114668607 | ||
|end_of_center_position=114668589 | |end_of_center_position=114668589 | ||
|entrez_id=67671 | |entrez_id=67671 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=0610025G13Rik | + | |gene_alias=0610025G13Rik{{!}}Rbt{{!}}Ts{{!}}Tss |
|gene_description=ribosomal protein L38 | |gene_description=ribosomal protein L38 | ||
|gene_id=67671 | |gene_id=67671 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1914921 | |hgnc_mgi_id=MGI:1914921 | ||
|nearest_ensembl=ENSMUSG00000057322 | |nearest_ensembl=ENSMUSG00000057322 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001048058 |
|nearest_refseq=NM_023372 | |nearest_refseq=NM_023372 | ||
|nearest_unigene=Mm.238817 | |nearest_unigene=Mm.238817 | ||
| − | |num_trans= | + | |num_trans=20 |
|species=mouse | |species=mouse | ||
|start=114668570 | |start=114668570 | ||
|start_of_center_position=114668588 | |start_of_center_position=114668588 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK002659 AK010518 AK012391 BC055346 BC034339 AK010277 AK151517 | + | |transcript_name=NM_001048058 NM_001048057 NM_001362918 NM_023372 AK002659 AK010518 AK012391 BC055346 BC034339 AK010277 AK151517 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99981.1 | |tss_id=mm_99981.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9JJI8 |
}} | }} | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114668588 |
|---|---|
| End of the center position in the TSS region: | 114668589 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001048058 NM_001048057 NM_001362918 NM_023372 AK002659 AK010518 AK012391 BC055346 BC034339 AK010277 AK151517 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | NM_001048058:0 NM_001048057:0 NM_001362918:0 NM_023372:0 AK002659:0 AK010518:0 AK012391:0 BC055346:0 BC034339:0 AK010277:0 AK151517:0 ENSMUST00000106599.7:2 BC047046:10 ENSMUST00000082092.4:19 ENSMUST00000077915.9:-23 ENSMUST00000106602.9:-47 AB037665:-47 BC094258:174 BC094644:174 BC081447:190 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_001048058 |
| Entrez ID: | 67671 |
| Nearest Unigene: | Mm.238817 |
| Nearest Refseq: | NM_023372 |
| Nearest Ensembl: | ENSMUSG00000057322 |
| Gene Name: | ribosomal protein L38 |
| Gene Alias: | 0610025G13Rik|Rbt|Ts|Tss |
| Gene Description: | ribosomal protein L38 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
