Difference between revisions of "TSS:Hg 242720.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENST00000262096.13:35 NM_016353:35 BC039253:75 HM005679:75 AB023584:-120 KJ904748:277 BC050272:-418 | |all_trans=ENST00000262096.13:35 NM_016353:35 BC039253:75 HM005679:75 AB023584:-120 KJ904748:277 BC050272:-418 | ||
| − | |chr= | + | |chr=chr8 |
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=35 | |distance=35 | ||
|distance_to_tss=-16002 | |distance_to_tss=-16002 | ||
| − | |end= | + | |end=17156447 |
|end_of_center_position=17156447 | |end_of_center_position=17156447 | ||
|entrez_id=645700 | |entrez_id=645700 | ||
| Line 24: | Line 24: | ||
|num_trans=7 | |num_trans=7 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=17156446 |
|start_of_center_position=17156446 | |start_of_center_position=17156446 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000262096.13 NM_016353 | |transcript_name=ENST00000262096.13 NM_016353 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242720.1 | |tss_id=hg_242720.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A140VKD9 Q9UIJ5 | |uniprot_id=A0A140VKD9 Q9UIJ5 | ||
}} | }} | ||
Revision as of 12:34, 14 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17156446 |
|---|---|
| End of the center position in the TSS region: | 17156447 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000262096.13 NM_016353 |
|---|---|
| Distance: | 35 |
| Num_trans: | 7 |
| All_trans: | ENST00000262096.13:35 NM_016353:35 BC039253:75 HM005679:75 AB023584:-120 KJ904748:277 BC050272:-418 |
TATA-Box annotation
| Distance to TSS: | -16002 |
|---|---|
| Nearest PromoterID: | NR_034163 |
| Entrez ID: | 645700 |
| Nearest Unigene: | Hs.690815 |
| Nearest Refseq: | NR_034163 |
| Nearest Ensembl: | ENSG00000159904 |
| Gene Name: | zinc finger DHHC-type palmitoyltransferase 2 |
| Gene Alias: | - |
| Gene Description: | zinc finger protein 890, pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.045 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
