Difference between revisions of "TSS:Hg 242758.1"
From referenceTSS
| Line 2: | Line 2: | ||
|RAP1= | |RAP1= | ||
|all_trans=ENST00000520970.5:10 AB209590:10 ENST00000397814.7:-18 ENST00000354870.5:-18 ENST00000518913.5:75 BC002593:75 BC009305:75 BC032105:75 BC044626:75 BC142953:99 AK291620:110 ENST00000520982.5:147 ENST00000520626.6:147 BC136679:147 BC144365:147 BC144366:147 ENST00000518656.5:158 BC101763:158 BC101765:158 BC143338:158 ENST00000306349.13:195 ENST00000306385.10:195 NM_001199:195 NR_033403:195 NM_006129:195 NR_033404:195 M22488:200 ENST00000471755.5:223 ENST00000483364.5:223 ENST00000521385.5:223 Y08723:223 Y08724:223 Y08725:223 AB527418:228 KJ896503:228 U50330:229 LF212583:-448 MA448160:-448 | |all_trans=ENST00000520970.5:10 AB209590:10 ENST00000397814.7:-18 ENST00000354870.5:-18 ENST00000518913.5:75 BC002593:75 BC009305:75 BC032105:75 BC044626:75 BC142953:99 AK291620:110 ENST00000520982.5:147 ENST00000520626.6:147 BC136679:147 BC144365:147 BC144366:147 ENST00000518656.5:158 BC101763:158 BC101765:158 BC143338:158 ENST00000306349.13:195 ENST00000306385.10:195 NM_001199:195 NR_033403:195 NM_006129:195 NR_033404:195 M22488:200 ENST00000471755.5:223 ENST00000483364.5:223 ENST00000521385.5:223 Y08723:223 Y08724:223 Y08725:223 AB527418:228 KJ896503:228 U50330:229 LF212583:-448 MA448160:-448 | ||
| − | |chr= | + | |chr=chr8 |
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=10 | |distance=10 | ||
|distance_to_tss=-4 | |distance_to_tss=-4 | ||
| − | |end= | + | |end=22165177 |
|end_of_center_position=22165168 | |end_of_center_position=22165168 | ||
|entrez_id=27342 | |entrez_id=27342 | ||
| Line 26: | Line 26: | ||
|rabex-5= | |rabex-5= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=22165157 |
|start_of_center_position=22165167 | |start_of_center_position=22165167 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000520970.5 AB209590 | |transcript_name=ENST00000520970.5 AB209590 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242758.1 | |tss_id=hg_242758.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=P13497 Q59F71 | |uniprot_id=P13497 Q59F71 | ||
}} | }} | ||
Revision as of 12:35, 14 July 2021
Basic information about the TSS
|
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| Start of the center position in the TSS region: | 22165167 |
|---|---|
| End of the center position in the TSS region: | 22165168 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520970.5 AB209590 |
|---|---|
| Distance: | 10 |
| Num_trans: | 38 |
| All_trans: | ENST00000520970.5:10 AB209590:10 ENST00000397814.7:-18 ENST00000354870.5:-18 ENST00000518913.5:75 BC002593:75 BC009305:75 BC032105:75 BC044626:75 BC142953:99 AK291620:110 ENST00000520982.5:147 ENST00000520626.6:147 BC136679:147 BC144365:147 BC144366:147 ENST00000518656.5:158 BC101763:158 BC101765:158 BC143338:158 ENST00000306349.13:195 ENST00000306385.10:195 NM_001199:195 NR_033403:195 NM_006129:195 NR_033404:195 M22488:200 ENST00000471755.5:223 ENST00000483364.5:223 ENST00000521385.5:223 Y08723:223 Y08724:223 Y08725:223 AB527418:228 KJ896503:228 U50330:229 LF212583:-448 MA448160:-448 |
TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_001287061 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | bone morphogenetic protein 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
