Difference between revisions of "TSS:Hg 243218.1"
From referenceTSS
| Line 6: | Line 6: | ||
|JCTN= | |JCTN= | ||
|all_trans=BC000524:-84 BC009427:-85 M20020:-86 J03537:-86 CU693282:-86 DQ891744:-86 KJ897500:-86 KJ897501:-86 DQ895025:-86 KJ905910:-86 AB529028:-86 | |all_trans=BC000524:-84 BC009427:-85 M20020:-86 J03537:-86 CU693282:-86 DQ891744:-86 KJ897500:-86 KJ897501:-86 DQ895025:-86 KJ905910:-86 AB529028:-86 | ||
| − | |chr= | + | |chr=chr9 |
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-84 | |distance=-84 | ||
|distance_to_tss=5631 | |distance_to_tss=5631 | ||
| − | |end= | + | |end=19379534 |
|end_of_center_position=19379534 | |end_of_center_position=19379534 | ||
|entrez_id=444 | |entrez_id=444 | ||
| Line 30: | Line 30: | ||
|num_trans=11 | |num_trans=11 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=19379533 |
|start_of_center_position=19379533 | |start_of_center_position=19379533 | ||
| − | |strand= | + | |strand=- |
|transcript_name=BC000524 | |transcript_name=BC000524 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_243218.1 | |tss_id=hg_243218.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 12:45, 14 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19379533 |
|---|---|
| End of the center position in the TSS region: | 19379534 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC000524 |
|---|---|
| Distance: | -84 |
| Num_trans: | 11 |
| All_trans: | BC000524:-84 BC009427:-85 M20020:-86 J03537:-86 CU693282:-86 DQ891744:-86 KJ897500:-86 KJ897501:-86 DQ895025:-86 KJ905910:-86 AB529028:-86 |
TATA-Box annotation
| Distance to TSS: | 5631 |
|---|---|
| Nearest PromoterID: | NM_032467 |
| Entrez ID: | 444 |
| Nearest Unigene: | Hs.332422 |
| Nearest Refseq: | NM_004318 |
| Nearest Ensembl: | ENSG00000198363 |
| Gene Name: | ribosomal protein S6 |
| Gene Alias: | AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin |
| Gene Description: | aspartate beta-hydroxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
