Difference between revisions of "TSS:Hg 234730.1"
From referenceTSS
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| − | {{ | + | {{TSSDetail |
|all_trans=NR_024540:-4 ENST00000488147.1:-204 | |all_trans=NR_024540:-4 ENST00000488147.1:-204 | ||
| − | + | |chr=chr1 | |
| − | |chr= | + | |cpg_percent=0.135 |
| − | |cpg_percent= | ||
|distance=-4 | |distance=-4 | ||
| − | |distance_to_tss= | + | |distance_to_tss=14 |
| − | |end= | + | |end=29366 |
| − | |entrez_id= | + | |entrez_id=653635 |
| − | |gc_percent= | + | |gc_percent=0.78607 |
| − | |gene_alias= | + | |gene_alias=FAM39F|WASH5P |
| − | |gene_description= | + | |gene_description=WAS protein family homolog 7 pseudogene |
|gene_id=653635 | |gene_id=653635 | ||
|gene_name=WAS protein family homolog 7 pseudogene | |gene_name=WAS protein family homolog 7 pseudogene | ||
| Line 16: | Line 15: | ||
|gene_symbol=WASH7P | |gene_symbol=WASH7P | ||
|gene_synonyms=FAM39F | |gene_synonyms=FAM39F | ||
| − | |gene_type= | + | |gene_type=pseudo |
|hgnc_mgi_id=HGNC:38034 | |hgnc_mgi_id=HGNC:38034 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_024540 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_024540 |
| − | |nearest_unigene= | + | |nearest_unigene=Hs.446466 |
|num_trans=2 | |num_trans=2 | ||
| + | |peakPage= | ||
|peak_id=hg_234730.1 | |peak_id=hg_234730.1 | ||
|peak_score= | |peak_score= | ||
| − | |start= | + | |species=human |
| − | |strand= | + | |start=29346 |
| + | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=NR_024540 | |transcript_name=NR_024540 | ||
| + | |tss_classification=no | ||
| + | |tss_id=hg_234730.1 | ||
| + | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:44, 13 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NR_024540 |
|---|---|
| Distance: | -4 |
| Num_trans: | 2 |
| All_trans: | NR_024540:-4 ENST00000488147.1:-204 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NR_024540 |
| Entrez ID: | 653635 |
| Nearest Unigene: | Hs.446466 |
| Nearest Refseq: | NR_024540 |
| Nearest Ensembl: | |
| Gene Name: | WAS protein family homolog 7 pseudogene |
| Gene Alias: | FAM39F |
| Gene Description: | WAS protein family homolog 7 pseudogene |
| Gene Type: | pseudo |
| CpG%: | 0.135 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
