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Difference between revisions of "TSS:Mm 99962.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=AK019727:0 AK171307:380 ENSMUST00000042227.14:386 BC048942:386 NM_177777:408 NM_001361593:408 ENSMUST00000123466.1:414 AK139389:414 ENSMUST00000106621.3:421 AK017508:421
+
|all_trans=MGI:1925438
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.145
 
|cpg_percent=0.145
Line 22: Line 22:
 
|nearest_refseq=NM_138598
 
|nearest_refseq=NM_138598
 
|nearest_unigene=Mm.351688
 
|nearest_unigene=Mm.351688
|num_trans=10
+
|num_trans=78188
 
|species=mouse
 
|species=mouse
 
|start=113684021
 
|start=113684021

Latest revision as of 19:37, 28 July 2021

Basic information about the TSS


TSS ID:mm_99962.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:113684021
End:113684026
Strand:+
TSS Score:1
Start of the center position in the TSS region:113684023
End of the center position in the TSS region:113684024



Gene and protein annotation


Transcript_name:AK019727
Distance:0
GeneID:78188
HGNC/MGI_ID:MGI:1925438
UniProt_ID:
Gene_name:RIKEN cDNA 4930539H15 gene
Gene_symbol:4930539H15Rik
Gene_synonyms:
Gene_source:MGI:1925438



Transcript annotation


Transcript_name:AK019727
Distance:0
Num_trans:78188
All_trans:MGI:1925438



TATA-Box annotation


Distance to TSS:-102
Nearest PromoterID:NM_001362751
Entrez ID:28081
Nearest Unigene:Mm.351688
Nearest Refseq:NM_138598
Nearest Ensembl:ENSMUSG00000041629
Gene Name:RIKEN cDNA 4930539H15 gene
Gene Alias:D11Wsu99e
Gene Description:family with sequence similarity 104, member A
Gene Type:protein-coding
CpG%:0.145
GC%:0.751244
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):