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Difference between revisions of "TSS:Mm 99982.1"

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Line 3: Line 3:
 
|Ts=
 
|Ts=
 
|Tss=
 
|Tss=
|all_trans=BC094258:7 BC094644:7 BC081447:23 ENSMUST00000082092.4:-128 BC047046:-137 ENSMUST00000106599.7:-145 AK010277:-147 AK151517:-147 BC034339:-150 AK010518:-163 AK012391:-163 BC055346:-163 NM_001048058:-174 NM_001048057:-174 NM_001362918:-174 NM_023372:-174 AK002659:-176 ENSMUST00000077915.9:-206 ENSMUST00000106602.9:-230 AB037665:-230
+
|all_trans=MGI:1914921
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.135
 
|cpg_percent=0.135
Line 25: Line 25:
 
|nearest_refseq=NM_023372
 
|nearest_refseq=NM_023372
 
|nearest_unigene=Mm.238817
 
|nearest_unigene=Mm.238817
|num_trans=20
+
|num_trans=67671
 
|species=mouse
 
|species=mouse
 
|start=114668753
 
|start=114668753

Latest revision as of 19:37, 28 July 2021

Basic information about the TSS


TSS ID:mm_99982.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:114668753
End:114668774
Strand:+
TSS Score:1
Start of the center position in the TSS region:114668763
End of the center position in the TSS region:114668764



Gene and protein annotation


Transcript_name:BC094258 BC094644
Distance:7
GeneID:67671
HGNC/MGI_ID:MGI:1914921
UniProt_ID:
Gene_name:ribosomal protein L38
Gene_symbol:Rpl38
Gene_synonyms:0610025G13Rik Rbt Ts Tss
Gene_source:MGI:1914921



Transcript annotation


Transcript_name:BC094258 BC094644
Distance:7
Num_trans:67671
All_trans:MGI:1914921



TATA-Box annotation


Distance to TSS:184
Nearest PromoterID:NM_001048058
Entrez ID:67671
Nearest Unigene:Mm.238817
Nearest Refseq:NM_023372
Nearest Ensembl:ENSMUSG00000057322
Gene Name:ribosomal protein L38
Gene Alias:0610025G13Rik|Rbt|Ts|Tss
Gene Description:ribosomal protein L38
Gene Type:protein-coding
CpG%:0.135
GC%:0.746269
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):