Difference between revisions of "Template:PeakPage"
From referenceTSS
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<div style="width:42%; float:left;"> | <div style="width:42%; float:left;"> | ||
<table class="inner" > | <table class="inner" > | ||
− | <tr><th scope="row" class="item_label">TSS ID:</th><td> | + | <tr><th scope="row" class="item_label">TSS ID:</th><td>{{{tss_id}}}</td></tr> |
− | <tr><th scope="row" class="item_label"> | + | <tr><th scope="row" class="item_label">Species:</th><td>{{{species}}}</td></tr> |
− | <tr><th scope="row" class="item_label">Chr:</th><td> | + | <tr><th scope="row" class="item_label">Chr:</th><td>{{{chr}}}</td></tr> |
− | <tr><th scope="row" class="item_label">TSS Classification:</th><td> | + | <tr><th scope="row" class="item_label">TSS Classification:</th><td>{{{tss_classification}}}</td></tr> |
</table> | </table> | ||
</div> | </div> | ||
<div style="width:42%; float:right;"> | <div style="width:42%; float:right;"> | ||
<table class="inner" > | <table class="inner" > | ||
− | <tr><th scope="row" class="item_label">Start:</th><td> | + | <tr><th scope="row" class="item_label">Start:</th><td>{{{start}}}</td></tr> |
− | <tr><th scope="row" class="item_label">End:</th><td> | + | <tr><th scope="row" class="item_label">End:</th><td>{{{end}}}</td></tr> |
− | <tr><th scope="row" class="item_label">Strand:</th><td> | + | <tr><th scope="row" class="item_label">Strand:</th><td>{{{strand}}}</td></tr> |
− | <tr><th scope="row" class="item_label">TSS Score:</th><td> | + | <tr><th scope="row" class="item_label">TSS Score:</th><td>{{{strand}}}</td></tr> |
</table> | </table> | ||
</div></td></tr> | </div></td></tr> | ||
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<div style="width:42%; float:left;"> | <div style="width:42%; float:left;"> | ||
<table class="inner" > | <table class="inner" > | ||
− | <tr><th scope="row" align="left">Transcript_name:</th><td> | + | <tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr> |
− | <tr><th scope="row" align="left">Distance:</th><td> | + | <tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr> |
− | <tr><th scope="row" align="left">GeneID:</th><td> | + | <tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id}}}</td></tr> |
− | <tr><th scope="row" align="left">HGNC/MGI_ID:</th><td> | + | <tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id}}}</td></tr> |
− | <tr><th scope="row" align="left">UniProt_ID:</th><td> | + | <tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id}}}</td></tr> |
</table></div> | </table></div> | ||
<div style="width:42%; float:right;"> | <div style="width:42%; float:right;"> | ||
<table class="inner" > | <table class="inner" > | ||
− | <tr><th scope="row" align="left">Gene_name:</th><td> | + | <tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name}}}</td></tr> |
− | <tr><th scope="row" align="left">Gene_symbol:</th><td> | + | <tr><th scope="row" align="left">Gene_symbol:</th><td>{{{gene_symbol}}}</td></tr> |
− | <tr><th scope="row" align="left">Gene_synonyms:</th><td> | + | <tr><th scope="row" align="left">Gene_synonyms:</th><td>{{{gene_synonyms}}}</td></tr> |
− | <tr><th scope="row" align="left">Gene_source:</th><td> | + | <tr><th scope="row" align="left">Gene_source:</th><td>{{{gene_source}}}</td></tr> |
</table> | </table> | ||
</div></td></tr> | </div></td></tr> | ||
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<hr width="200px" size="2" align="left" noshade> | <hr width="200px" size="2" align="left" noshade> | ||
<table class="inner" border="0" > | <table class="inner" border="0" > | ||
− | <tr><th scope="row" align="left">Transcript_name:</th><td> | + | <tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name}}}</td></tr> |
− | <tr><th scope="row" align="left">Distance:</th><td> | + | <tr><th scope="row" align="left">Distance:</th><td>{{{distance}}}</td></tr> |
− | <tr><th scope="row" align="left">Num_trans:</th><td> | + | <tr><th scope="row" align="left">Num_trans:</th><td>{{{num_trans}}}</td></tr> |
− | <tr><th scope="row" align="left">All_trans:</th><td> | + | <tr><th scope="row" align="left">All_trans:</th><td>:{{{all_trans}}}</td></tr> |
</table> | </table> | ||
<br/> | <br/> | ||
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<hr width="200px" size="2" align="left" noshade> | <hr width="200px" size="2" align="left" noshade> | ||
<table class="inner" style="width: 600px;table-layout:fixed;"> | <table class="inner" style="width: 600px;table-layout:fixed;"> | ||
− | <tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Distance to TSS:</th><td class="ttb">{{{distance_to_tss}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Nearest PromoterID:</th><td class="ttb">{{{nearest_promoter_id}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Entrez ID:</th><td class="ttb">{{{entrez_id}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Nearest Unigene:</th><td class="ttb">{{{nearest_unigene}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Nearest Refseq:</th><td class="ttb">{{{nearest_refseq}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Nearest Ensembl:</th><td class="ttb">{{{nearest_ensembl}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Gene Name:</th><td class="ttb">{{{gene_name}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Gene Alias:</th><td class="ttb">{{{gene_alias}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Gene Description:</th><td class="ttb">{{{gene_description}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">Gene Type:</th><td class="ttb">{{{gene_type}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">CpG%:</th><td class="ttb">{{{cpg_percent}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">GC%:</th><td class="ttb">{{{gc_percent}}}</td></tr> |
− | <tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb"> | + | <tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box}}}</td></tr> |
</table> | </table> | ||
{{#set:species={{{species}}}}} | {{#set:species={{{species}}}}} |
Revision as of 10:47, 22 February 2018
Basic information about the TSS
|
Gene and protein annotation
|
Transcript annotation
Transcript_name: | {{{transcript_name}}} |
---|---|
Distance: | {{{distance}}} |
Num_trans: | {{{num_trans}}} |
All_trans: | :{{{all_trans}}} |
TATA-Box annotation
Distance to TSS: | {{{distance_to_tss}}} |
---|---|
Nearest PromoterID: | {{{nearest_promoter_id}}} |
Entrez ID: | {{{entrez_id}}} |
Nearest Unigene: | {{{nearest_unigene}}} |
Nearest Refseq: | {{{nearest_refseq}}} |
Nearest Ensembl: | {{{nearest_ensembl}}} |
Gene Name: | {{{gene_name}}} |
Gene Alias: | {{{gene_alias}}} |
Gene Description: | {{{gene_description}}} |
Gene Type: | {{{gene_type}}} |
CpG%: | {{{cpg_percent}}} |
GC%: | {{{gc_percent}}} |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | {{{tata_box}}} |