Difference between revisions of "TSS:Hg 1000.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-96 |entrez_id=55160 |gc_percent=0.532338 |gene_alias=GrinchGEF |gene_description=Rho guanine nucleotide exchange factor 10 lik...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000375415.5:83 NM_001319837:83 NM_001011722:83 uc001bao.4:83 BC117171:93 BC143347:93 HQ258640:126 DQ139833:126 KJ899085:126 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=83 | ||
|distance_to_tss=-96 | |distance_to_tss=-96 | ||
| + | |end=17580470 | ||
|entrez_id=55160 | |entrez_id=55160 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=GrinchGEF | |gene_alias=GrinchGEF | ||
|gene_description=Rho guanine nucleotide exchange factor 10 like | |gene_description=Rho guanine nucleotide exchange factor 10 like | ||
| − | |gene_name=ARHGEF10L | + | |gene_id=55160 |
| + | |gene_name=Rho guanine nucleotide exchange factor 10 like | ||
| + | |gene_source=HGNC:25540 | ||
| + | |gene_symbol=ARHGEF10L | ||
| + | |gene_synonyms=FLJ10521 KIAA1626 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25540 | ||
|nearest_ensembl=ENSG00000074964 | |nearest_ensembl=ENSG00000074964 | ||
|nearest_promoter_id=NM_001319837 | |nearest_promoter_id=NM_001319837 | ||
|nearest_refseq=NM_018125 | |nearest_refseq=NM_018125 | ||
|nearest_unigene=Hs.443460 | |nearest_unigene=Hs.443460 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=17580443 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000375415.5 NM_001319837 NM_001011722 uc001bao.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1000.1 | |tss_id=hg_1000.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9HCE6 | ||
}} | }} | ||
Revision as of 16:59, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000375415.5 NM_001319837 NM_001011722 uc001bao.4 |
|---|---|
| Distance: | 83 |
| Num_trans: | 9 |
| All_trans: | ENST00000375415.5:83 NM_001319837:83 NM_001011722:83 uc001bao.4:83 BC117171:93 BC143347:93 HQ258640:126 DQ139833:126 KJ899085:126 |
TATA-Box annotation
| Distance to TSS: | -96 |
|---|---|
| Nearest PromoterID: | NM_001319837 |
| Entrez ID: | 55160 |
| Nearest Unigene: | Hs.443460 |
| Nearest Refseq: | NM_018125 |
| Nearest Ensembl: | ENSG00000074964 |
| Gene Name: | Rho guanine nucleotide exchange factor 10 like |
| Gene Alias: | GrinchGEF |
| Gene Description: | Rho guanine nucleotide exchange factor 10 like |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
