Difference between revisions of "TSS:Hg 100086.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=15 |entrez_id=11168 |gc_percent=0.686567 |gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 |gene_description=PC4 and SFRS1 interacting...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LEDGF= | ||
| + | |PAIP= | ||
| + | |PSIP2= | ||
| + | |all_trans=ENST00000380738.8:4 uc003zlw.6:4 ENST00000380716.8:5 uc003zlz.5:5 ENST00000380715.5:8 ENST00000488797.1:8 uc003zly.4:8 uc064sfl.1:8 BC044568:8 ENST00000380733.8:-10 ENST00000484265.1:10 NM_033222:-10 NM_001128217:-10 NM_001317898:-10 NM_001317900:-10 uc003zlv.6:-10 uc064sfm.1:10 BC033817:10 BC022971:12 AF063020:15 BC064135:33 AF432220:38 BC013160:43 BC040032:48 ENST00000463712.6:53 uc064sfk.1:53 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=4 | ||
|distance_to_tss=15 | |distance_to_tss=15 | ||
| + | |end=15511009 | ||
|entrez_id=11168 | |entrez_id=11168 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 | |gene_alias=DFS70|LEDGF|PAIP|PSIP2|p52|p75 | ||
|gene_description=PC4 and SFRS1 interacting protein 1 | |gene_description=PC4 and SFRS1 interacting protein 1 | ||
| − | |gene_name=PSIP1 | + | |gene_id=11168 |
| + | |gene_name=PC4 and SFRS1 interacting protein 1 | ||
| + | |gene_source=HGNC:9527 | ||
| + | |gene_symbol=PSIP1 | ||
| + | |gene_synonyms=LEDGF p52 p75 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9527 | ||
|nearest_ensembl=ENSG00000164985 | |nearest_ensembl=ENSG00000164985 | ||
|nearest_promoter_id=NM_001128217 | |nearest_promoter_id=NM_001128217 | ||
|nearest_refseq=NM_021144 | |nearest_refseq=NM_021144 | ||
|nearest_unigene=Hs.658434 | |nearest_unigene=Hs.658434 | ||
| + | |num_trans=26 | ||
| + | |p52= | ||
| + | |p75= | ||
| + | |species=human | ||
| + | |start=15510998 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000380738.8 uc003zlw.6 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100086.1 | |tss_id=hg_100086.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O75475 | ||
}} | }} | ||
Revision as of 17:01, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000380738.8 uc003zlw.6 |
|---|---|
| Distance: | 4 |
| Num_trans: | 26 |
| All_trans: | ENST00000380738.8:4 uc003zlw.6:4 ENST00000380716.8:5 uc003zlz.5:5 ENST00000380715.5:8 ENST00000488797.1:8 uc003zly.4:8 uc064sfl.1:8 BC044568:8 ENST00000380733.8:-10 ENST00000484265.1:10 NM_033222:-10 NM_001128217:-10 NM_001317898:-10 NM_001317900:-10 uc003zlv.6:-10 uc064sfm.1:10 BC033817:10 BC022971:12 AF063020:15 BC064135:33 AF432220:38 BC013160:43 BC040032:48 ENST00000463712.6:53 uc064sfk.1:53 |
TATA-Box annotation
| Distance to TSS: | 15 |
|---|---|
| Nearest PromoterID: | NM_001128217 |
| Entrez ID: | 11168 |
| Nearest Unigene: | Hs.658434 |
| Nearest Refseq: | NM_021144 |
| Nearest Ensembl: | ENSG00000164985 |
| Gene Name: | PC4 and SFRS1 interacting protein 1 |
| Gene Alias: | DFS70 |
| Gene Description: | PC4 and SFRS1 interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
