Difference between revisions of "TSS:Hg 100119.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=142899 |entrez_id=54796 |gc_percent=0.477612 |gene_alias=BSN2 |gene_description=basonuclin 2 |gene_name=BNC2 |gene_type=protein-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AY438376:-15 ENST00000418777.5:-101 ENST00000468187.6:-101 uc064sgb.1:-101 uc064sgj.1:-101 ENST00000603713.5:-269 uc064sgf.1:-269 DQ884944:-269 ENST00000603313.5:-318 uc064sgi.1:-318 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-15 | ||
|distance_to_tss=142899 | |distance_to_tss=142899 | ||
| + | |end=16727896 | ||
|entrez_id=54796 | |entrez_id=54796 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
|gene_alias=BSN2 | |gene_alias=BSN2 | ||
|gene_description=basonuclin 2 | |gene_description=basonuclin 2 | ||
| − | |gene_name=BNC2 | + | |gene_id=54796 |
| + | |gene_name=basonuclin 2 | ||
| + | |gene_source=HGNC:30988 | ||
| + | |gene_symbol=BNC2 | ||
| + | |gene_synonyms=BSN2 FLJ20043 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30988 | ||
|nearest_ensembl=ENSG00000173068 | |nearest_ensembl=ENSG00000173068 | ||
|nearest_promoter_id=NM_017637 | |nearest_promoter_id=NM_017637 | ||
|nearest_refseq=NM_017637 | |nearest_refseq=NM_017637 | ||
|nearest_unigene=Hs.656581 | |nearest_unigene=Hs.656581 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=16727882 | ||
| + | |strand=- | ||
|tata_box="-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00)" | |tata_box="-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00)" | ||
| + | |transcript_name=AY438376 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100119.1 | |tss_id=hg_100119.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:01, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AY438376 |
|---|---|
| Distance: | -15 |
| Num_trans: | 10 |
| All_trans: | AY438376:-15 ENST00000418777.5:-101 ENST00000468187.6:-101 uc064sgb.1:-101 uc064sgj.1:-101 ENST00000603713.5:-269 uc064sgf.1:-269 DQ884944:-269 ENST00000603313.5:-318 uc064sgi.1:-318 |
TATA-Box annotation
| Distance to TSS: | 142899 |
|---|---|
| Nearest PromoterID: | NM_017637 |
| Entrez ID: | 54796 |
| Nearest Unigene: | Hs.656581 |
| Nearest Refseq: | NM_017637 |
| Nearest Ensembl: | ENSG00000173068 |
| Gene Name: | basonuclin 2 |
| Gene Alias: | BSN2 |
| Gene Description: | basonuclin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00)" |
