Difference between revisions of "TSS:Hg 100208.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=263 |entrez_id=3467 |gc_percent=0.422886 |gene_alias=- |gene_description=interferon omega 1 |gene_name=IFNW1 |gene_type=protein-cod...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC117290:30 BC117292:30 BC069095:63 KJ891441:67 HQ258108:67 AB464596:67 X02669:129 AY780805:136 NM_002177:-262 | ||
| + | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| + | |distance=30 | ||
|distance_to_tss=263 | |distance_to_tss=263 | ||
| + | |end=21141639 | ||
|entrez_id=3467 | |entrez_id=3467 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=interferon omega 1 | |gene_description=interferon omega 1 | ||
| − | |gene_name=IFNW1 | + | |gene_id=3467 |
| + | |gene_name="interferon, omega 1" | ||
| + | |gene_source=HGNC:5448 | ||
| + | |gene_symbol=IFNW1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5448 | ||
|nearest_ensembl=ENSG00000177047 | |nearest_ensembl=ENSG00000177047 | ||
|nearest_promoter_id=NM_002177 | |nearest_promoter_id=NM_002177 | ||
|nearest_refseq=NM_002177 | |nearest_refseq=NM_002177 | ||
|nearest_unigene=Hs.73010 | |nearest_unigene=Hs.73010 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=21141636 | ||
| + | |strand=- | ||
|tata_box="-35(TCCTATTAAAAG,-,0.00),-33(CTATTAAAAGCC,+,0.00)" | |tata_box="-35(TCCTATTAAAAG,-,0.00),-33(CTATTAAAAGCC,+,0.00)" | ||
| + | |transcript_name=BC117290 BC117292 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100208.1 | |tss_id=hg_100208.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC117290 BC117292 |
|---|---|
| Distance: | 30 |
| Num_trans: | 9 |
| All_trans: | BC117290:30 BC117292:30 BC069095:63 KJ891441:67 HQ258108:67 AB464596:67 X02669:129 AY780805:136 NM_002177:-262 |
TATA-Box annotation
| Distance to TSS: | 263 |
|---|---|
| Nearest PromoterID: | NM_002177 |
| Entrez ID: | 3467 |
| Nearest Unigene: | Hs.73010 |
| Nearest Refseq: | NM_002177 |
| Nearest Ensembl: | ENSG00000177047 |
| Gene Name: | "interferon, omega 1" |
| Gene Alias: | - |
| Gene Description: | interferon omega 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(TCCTATTAAAAG,-,0.00),-33(CTATTAAAAGCC,+,0.00)" |
