Difference between revisions of "TSS:Hg 100210.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-113 |entrez_id=3453 |gc_percent=0.40796 |gene_alias=IFNAP22 |gene_description="interferon alpha 22, pseudogene" |gene_name=IFN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000458710.2:45 NR_036676:101 V00539:101 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=45 | ||
|distance_to_tss=-113 | |distance_to_tss=-113 | ||
| + | |end=21278689 | ||
|entrez_id=3453 | |entrez_id=3453 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=IFNAP22 | |gene_alias=IFNAP22 | ||
|gene_description="interferon alpha 22, pseudogene" | |gene_description="interferon alpha 22, pseudogene" | ||
| − | |gene_name=IFNA22P | + | |gene_id= |
| + | |gene_name="interferon, alpha 22, pseudogene" | ||
| + | |gene_source=HGNC:5431 | ||
| + | |gene_symbol=IFNA22P | ||
| + | |gene_synonyms= | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:5431 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_036676 | |nearest_promoter_id=NR_036676 | ||
|nearest_refseq=NR_036676 | |nearest_refseq=NR_036676 | ||
|nearest_unigene=Hs.545842 | |nearest_unigene=Hs.545842 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=21278663 | ||
| + | |strand=- | ||
|tata_box="-45(CCCTATTTAAGG,-,0.00)" | |tata_box="-45(CCCTATTTAAGG,-,0.00)" | ||
| + | |transcript_name=ENST00000458710.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100210.1 | |tss_id=hg_100210.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:03, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000458710.2 |
|---|---|
| Distance: | 45 |
| Num_trans: | 3 |
| All_trans: | ENST00000458710.2:45 NR_036676:101 V00539:101 |
TATA-Box annotation
| Distance to TSS: | -113 |
|---|---|
| Nearest PromoterID: | NR_036676 |
| Entrez ID: | 3453 |
| Nearest Unigene: | Hs.545842 |
| Nearest Refseq: | NR_036676 |
| Nearest Ensembl: | |
| Gene Name: | "interferon, alpha 22, pseudogene" |
| Gene Alias: | IFNAP22 |
| Gene Description: | "interferon alpha 22, pseudogene" |
| Gene Type: | pseudo |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-45(CCCTATTTAAGG,-,0.00)" |
