Difference between revisions of "TSS:Hg 100266.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-27 |entrez_id=100048912 |gc_percent=0.721393 |gene_alias=ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS |gene_description=CD...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDKN2B-AS= | ||
| + | |CDKN2BAS= | ||
| + | |NCRNA00089= | ||
| + | |PCAT12= | ||
| + | |all_trans=ENST00000470819.2:-96 uc064skk.1:-96 ENST00000579755.1:128 uc003zpl.4:128 ENST00000361570.4:261 NM_058195:261 uc064ska.1:261 KC806059:261 U38945:261 S78535:280 AB464504:298 ENST00000530628.2:341 uc064skd.1:341 BC015960:371 BC021998:371 U26727:394 BT007020:421 AJ844636:432 ENST00000494262.5:-492 uc064skf.1:-492 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-96 | ||
|distance_to_tss=-27 | |distance_to_tss=-27 | ||
| + | |end=21994777 | ||
|entrez_id=100048912 | |entrez_id=100048912 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS | |gene_alias=ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS | ||
|gene_description=CDKN2B antisense RNA 1 | |gene_description=CDKN2B antisense RNA 1 | ||
| − | |gene_name= | + | |gene_id=1029 |
| + | |gene_name=cyclin-dependent kinase inhibitor 2A | ||
| + | |gene_source=HGNC:1787 | ||
| + | |gene_symbol=CDKN2A | ||
| + | |gene_synonyms=ARF CDK4I CMM2 INK4 INK4a MTS1 p14 p14ARF p16 p16INK4a p19 p19Arf | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:1787 | ||
|nearest_ensembl=ENSG00000240498 | |nearest_ensembl=ENSG00000240498 | ||
|nearest_promoter_id=NR_047532 | |nearest_promoter_id=NR_047532 | ||
|nearest_refseq=NR_003529 | |nearest_refseq=NR_003529 | ||
|nearest_unigene=Hs.493614 | |nearest_unigene=Hs.493614 | ||
| + | |num_trans=20 | ||
| + | |p15AS= | ||
| + | |species=human | ||
| + | |start=21994751 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000470819.2 uc064skk.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100266.1 | |tss_id=hg_100266.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000470819.2 uc064skk.1 |
|---|---|
| Distance: | -96 |
| Num_trans: | 20 |
| All_trans: | ENST00000470819.2:-96 uc064skk.1:-96 ENST00000579755.1:128 uc003zpl.4:128 ENST00000361570.4:261 NM_058195:261 uc064ska.1:261 KC806059:261 U38945:261 S78535:280 AB464504:298 ENST00000530628.2:341 uc064skd.1:341 BC015960:371 BC021998:371 U26727:394 BT007020:421 AJ844636:432 ENST00000494262.5:-492 uc064skf.1:-492 |
TATA-Box annotation
| Distance to TSS: | -27 |
|---|---|
| Nearest PromoterID: | NR_047532 |
| Entrez ID: | 100048912 |
| Nearest Unigene: | Hs.493614 |
| Nearest Refseq: | NR_003529 |
| Nearest Ensembl: | ENSG00000240498 |
| Gene Name: | cyclin-dependent kinase inhibitor 2A |
| Gene Alias: | ANRIL |
| Gene Description: | CDKN2B antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.105 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
