Difference between revisions of "TSS:Hg 100297.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=-145 |entrez_id=1993 |gc_percent=0.457711 |gene_alias=HEL-N1|HELN1|HUB |gene_description=ELAV like RNA binding protein 2 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HELN1= | ||
| + | |HUB= | ||
| + | |all_trans=ENST00000462649.1:28 uc064skx.1:28 U12431:-84 U29943:-84 ENST00000380117.5:-118 uc003zpv.4:-118 ENST00000397312.6:137 NM_004432:137 uc003zpu.4:137 AB209294:137 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=28 | ||
|distance_to_tss=-145 | |distance_to_tss=-145 | ||
| + | |end=23826219 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
|gene_alias=HEL-N1|HELN1|HUB | |gene_alias=HEL-N1|HELN1|HUB | ||
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
| − | |gene_name=ELAVL2 | + | |gene_id=1993 |
| + | |gene_name=ELAV like neuron-specific RNA binding protein 2 | ||
| + | |gene_source=HGNC:3313 | ||
| + | |gene_symbol=ELAVL2 | ||
| + | |gene_synonyms=HEL-N1 HuB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
|nearest_promoter_id=NM_004432 | |nearest_promoter_id=NM_004432 | ||
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=23826201 | ||
| + | |strand=- | ||
|tata_box="-36(CCTTTTAAGACG,+,0.00)" | |tata_box="-36(CCTTTTAAGACG,+,0.00)" | ||
| + | |transcript_name=ENST00000462649.1 uc064skx.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100297.1 | |tss_id=hg_100297.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:05, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000462649.1 uc064skx.1 |
|---|---|
| Distance: | 28 |
| Num_trans: | 10 |
| All_trans: | ENST00000462649.1:28 uc064skx.1:28 U12431:-84 U29943:-84 ENST00000380117.5:-118 uc003zpv.4:-118 ENST00000397312.6:137 NM_004432:137 uc003zpu.4:137 AB209294:137 |
TATA-Box annotation
| Distance to TSS: | -145 |
|---|---|
| Nearest PromoterID: | NM_004432 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like neuron-specific RNA binding protein 2 |
| Gene Alias: | HEL-N1 |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-36(CCTTTTAAGACG,+,0.00)" |
