Difference between revisions of "TSS:Hg 100360.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-173 |entrez_id=203228 |gc_percent=0.507463 |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 |gene_description=chromosome 9 open readin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DENNL72= | ||
| + | |FTDALS= | ||
| + | |FTDALS1= | ||
| + | |all_trans=ENST00000379995.1:-76 uc064smm.1:-76 NM_018325:161 JN681271:-165 AK057806:-165 AK291425:171 ENST00000619707.4:-187 ENST00000379997.7:-187 ENST00000461679.1:-187 NM_001256054:-187 NM_145005:-187 uc022bfa.2:-187 uc003zqr.2:-187 uc064smn.1:-187 ENST00000380003.7:204 uc003zqq.4:204 ENST00000488117.5:206 uc064sml.1:206 AL832467:206 AL832229:207 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-76 | ||
|distance_to_tss=-173 | |distance_to_tss=-173 | ||
| + | |end=27573679 | ||
|entrez_id=203228 | |entrez_id=203228 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
|gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | |gene_alias=ALSFTD|DENNL72|FTDALS|FTDALS1 | ||
|gene_description=chromosome 9 open reading frame 72 | |gene_description=chromosome 9 open reading frame 72 | ||
| − | |gene_name=C9orf72 | + | |gene_id=203228 |
| + | |gene_name=chromosome 9 open reading frame 72 | ||
| + | |gene_source=HGNC:28337 | ||
| + | |gene_symbol=C9orf72 | ||
| + | |gene_synonyms=MGC23980 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28337 | ||
|nearest_ensembl=ENSG00000147894 | |nearest_ensembl=ENSG00000147894 | ||
|nearest_promoter_id=NM_018325 | |nearest_promoter_id=NM_018325 | ||
|nearest_refseq=NM_018325 | |nearest_refseq=NM_018325 | ||
|nearest_unigene=Hs.493639 | |nearest_unigene=Hs.493639 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=27573653 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000379995.1 uc064smm.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100360.1 | |tss_id=hg_100360.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96LT7 | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000379995.1 uc064smm.1 |
|---|---|
| Distance: | -76 |
| Num_trans: | 20 |
| All_trans: | ENST00000379995.1:-76 uc064smm.1:-76 NM_018325:161 JN681271:-165 AK057806:-165 AK291425:171 ENST00000619707.4:-187 ENST00000379997.7:-187 ENST00000461679.1:-187 NM_001256054:-187 NM_145005:-187 uc022bfa.2:-187 uc003zqr.2:-187 uc064smn.1:-187 ENST00000380003.7:204 uc003zqq.4:204 ENST00000488117.5:206 uc064sml.1:206 AL832467:206 AL832229:207 |
TATA-Box annotation
| Distance to TSS: | -173 |
|---|---|
| Nearest PromoterID: | NM_018325 |
| Entrez ID: | 203228 |
| Nearest Unigene: | Hs.493639 |
| Nearest Refseq: | NM_018325 |
| Nearest Ensembl: | ENSG00000147894 |
| Gene Name: | chromosome 9 open reading frame 72 |
| Gene Alias: | ALSFTD |
| Gene Description: | chromosome 9 open reading frame 72 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
