Difference between revisions of "TSS:Hg 10037.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=34 |entrez_id=8718 |gc_percent=0.80597 |gene_alias=APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR |gene_description=TNF re...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |DDR3= | ||
| + | |DR3= | ||
| + | |LARD= | ||
| + | |TNFRSF12= | ||
| + | |TR3= | ||
| + | |TRAMP= | ||
| + | |WSL-1= | ||
| + | |WSL-LR= | ||
| + | |all_trans=ENST00000485036.5:0 ENST00000480393.5:0 ENST00000377782.7:0 ENST00000351959.9:0 uc001anh.4:0 uc057bus.1:0 uc057but.1:0 uc001anf.4:0 AF026070:0 AF026071:0 Y09392:0 BC117189:0 BC143886:0 ENST00000356876.7:-5 NM_148970:-5 NM_148967:-5 NM_148966:-5 NM_148965:-5 NM_003790:-5 NM_001039664:-5 uc001ane.4:-5 AY358309:-5 U74611:-5 ENST00000414040.6:26 ENST00000351748.7:26 ENST00000348333.7:26 ENST00000502588.5:26 ENST00000502730.5:26 ENST00000510563.5:26 ENST00000461703.6:26 uc001ang.4:26 uc001ana.4:26 uc057buu.1:26 uc057buv.1:26 uc057buw.1:26 uc057bux.1:26 uc057bvc.1:26 U72763:26 U78029:26 U94501:26 U94502:26 U94503:26 U94504:26 U94505:26 U94506:26 U94507:26 U94508:26 U94509:26 U94510:26 HQ258574:26 AB590587:26 AB308321:26 ENST00000513135.5:34 ENST00000453341.1:34 uc057bur.1:34 uc057bvd.1:34 U75380:34 U75381:34 U94512:34 U83597:42 U83598:42 ENST00000515145.1:275 uc057bve.1:275 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=0 | ||
|distance_to_tss=34 | |distance_to_tss=34 | ||
| + | |end=6466190 | ||
|entrez_id=8718 | |entrez_id=8718 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR | |gene_alias=APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR | ||
|gene_description=TNF receptor superfamily member 25 | |gene_description=TNF receptor superfamily member 25 | ||
| − | |gene_name=TNFRSF25 | + | |gene_id=8718 |
| + | |gene_name=tumor necrosis factor receptor superfamily member 25 | ||
| + | |gene_source=HGNC:11910 | ||
| + | |gene_symbol=TNFRSF25 | ||
| + | |gene_synonyms=APO-3 DDR3 DR3 LARD TR3 TRAMP WSL-1 WSL-LR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11910 | ||
|nearest_ensembl=ENSG00000215788 | |nearest_ensembl=ENSG00000215788 | ||
|nearest_promoter_id=NM_148965 | |nearest_promoter_id=NM_148965 | ||
|nearest_refseq=NM_003790 | |nearest_refseq=NM_003790 | ||
|nearest_unigene=Hs.462529 | |nearest_unigene=Hs.462529 | ||
| + | |num_trans=63 | ||
| + | |species=human | ||
| + | |start=6466132 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000485036.5 ENST00000480393.5 ENST00000377782.7 ENST00000351959.9 uc001anh.4 uc057bus.1 uc057but.1 uc001anf.4 AF026070 AF026071 Y09392 BC117189 BC143886 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10037.1 | |tss_id=hg_10037.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0C4DGF3 Q93038 | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000485036.5 ENST00000480393.5 ENST00000377782.7 ENST00000351959.9 uc001anh.4 uc057bus.1 uc057but.1 uc001anf.4 AF026070 AF026071 Y09392 BC117189 BC143886 |
|---|---|
| Distance: | 0 |
| Num_trans: | 63 |
| All_trans: | ENST00000485036.5:0 ENST00000480393.5:0 ENST00000377782.7:0 ENST00000351959.9:0 uc001anh.4:0 uc057bus.1:0 uc057but.1:0 uc001anf.4:0 AF026070:0 AF026071:0 Y09392:0 BC117189:0 BC143886:0 ENST00000356876.7:-5 NM_148970:-5 NM_148967:-5 NM_148966:-5 NM_148965:-5 NM_003790:-5 NM_001039664:-5 uc001ane.4:-5 AY358309:-5 U74611:-5 ENST00000414040.6:26 ENST00000351748.7:26 ENST00000348333.7:26 ENST00000502588.5:26 ENST00000502730.5:26 ENST00000510563.5:26 ENST00000461703.6:26 uc001ang.4:26 uc001ana.4:26 uc057buu.1:26 uc057buv.1:26 uc057buw.1:26 uc057bux.1:26 uc057bvc.1:26 U72763:26 U78029:26 U94501:26 U94502:26 U94503:26 U94504:26 U94505:26 U94506:26 U94507:26 U94508:26 U94509:26 U94510:26 HQ258574:26 AB590587:26 AB308321:26 ENST00000513135.5:34 ENST00000453341.1:34 uc057bur.1:34 uc057bvd.1:34 U75380:34 U75381:34 U94512:34 U83597:42 U83598:42 ENST00000515145.1:275 uc057bve.1:275 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_148965 |
| Entrez ID: | 8718 |
| Nearest Unigene: | Hs.462529 |
| Nearest Refseq: | NM_003790 |
| Nearest Ensembl: | ENSG00000215788 |
| Gene Name: | tumor necrosis factor receptor superfamily member 25 |
| Gene Alias: | APO-3 |
| Gene Description: | TNF receptor superfamily member 25 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
