Difference between revisions of "TSS:Hg 100387.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=145 |entrez_id=23586 |gc_percent=0.597015 |gene_alias=RIG-I|RIGI|RLR-1|SGMRT2 |gene_description=DExD/H-box helicase 58 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RIGI= | ||
| + | |RLR-1= | ||
| + | |SGMRT2= | ||
| + | |all_trans=AB385150:8 AK315040:-12 AK301678:-12 BX647917:-13 ENST00000379868.5:-25 uc064smz.1:-25 BC070029:-25 BC132786:-89 BC136610:-89 ENST00000379883.2:-141 NM_014314:-141 uc003zra.4:-141 AF038963:-141 BC107731:-160 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=8 | ||
|distance_to_tss=145 | |distance_to_tss=145 | ||
| + | |end=32526183 | ||
|entrez_id=23586 | |entrez_id=23586 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=RIG-I|RIGI|RLR-1|SGMRT2 | |gene_alias=RIG-I|RIGI|RLR-1|SGMRT2 | ||
|gene_description=DExD/H-box helicase 58 | |gene_description=DExD/H-box helicase 58 | ||
| − | |gene_name=DDX58 | + | |gene_id=23586 |
| + | |gene_name=DEXD/H-box helicase 58 | ||
| + | |gene_source=HGNC:19102 | ||
| + | |gene_symbol=DDX58 | ||
| + | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-I | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19102 | ||
|nearest_ensembl=ENSG00000107201 | |nearest_ensembl=ENSG00000107201 | ||
|nearest_promoter_id=NM_014314 | |nearest_promoter_id=NM_014314 | ||
|nearest_refseq=NM_014314 | |nearest_refseq=NM_014314 | ||
|nearest_unigene=Hs.190622 | |nearest_unigene=Hs.190622 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=32526174 | ||
| + | |strand=- | ||
|tata_box="-50(CGGCTTTAAAGC,-,0.00)" | |tata_box="-50(CGGCTTTAAAGC,-,0.00)" | ||
| + | |transcript_name=AB385150 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100387.1 | |tss_id=hg_100387.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB385150 |
|---|---|
| Distance: | 8 |
| Num_trans: | 14 |
| All_trans: | AB385150:8 AK315040:-12 AK301678:-12 BX647917:-13 ENST00000379868.5:-25 uc064smz.1:-25 BC070029:-25 BC132786:-89 BC136610:-89 ENST00000379883.2:-141 NM_014314:-141 uc003zra.4:-141 AF038963:-141 BC107731:-160 |
TATA-Box annotation
| Distance to TSS: | 145 |
|---|---|
| Nearest PromoterID: | NM_014314 |
| Entrez ID: | 23586 |
| Nearest Unigene: | Hs.190622 |
| Nearest Refseq: | NM_014314 |
| Nearest Ensembl: | ENSG00000107201 |
| Gene Name: | DEXD/H-box helicase 58 |
| Gene Alias: | RIG-I |
| Gene Description: | DExD/H-box helicase 58 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-50(CGGCTTTAAAGC,-,0.00)" |
