Difference between revisions of "TSS:Hg 100389.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=-1 |entrez_id=23586 |gc_percent=0.60199 |gene_alias=RIG-I|RIGI|RLR-1|SGMRT2 |gene_description=DExD/H-box helicase 58 |gene_name=D...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RIGI= | ||
| + | |RLR-1= | ||
| + | |SGMRT2= | ||
| + | |all_trans=ENST00000379883.2:0 NM_014314:0 uc003zra.4:0 AF038963:0 BC107731:0 BC132786:30 BC136610:30 ENST00000379868.5:94 uc064smz.1:94 BC070029:94 BX647917:106 AK315040:107 AK301678:107 AB385150:135 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=-1 | |distance_to_tss=-1 | ||
| + | |end=32526348 | ||
|entrez_id=23586 | |entrez_id=23586 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=RIG-I|RIGI|RLR-1|SGMRT2 | |gene_alias=RIG-I|RIGI|RLR-1|SGMRT2 | ||
|gene_description=DExD/H-box helicase 58 | |gene_description=DExD/H-box helicase 58 | ||
| − | |gene_name=DDX58 | + | |gene_id=23586 |
| + | |gene_name=DEXD/H-box helicase 58 | ||
| + | |gene_source=HGNC:19102 | ||
| + | |gene_symbol=DDX58 | ||
| + | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-I | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19102 | ||
|nearest_ensembl=ENSG00000107201 | |nearest_ensembl=ENSG00000107201 | ||
|nearest_promoter_id=NM_014314 | |nearest_promoter_id=NM_014314 | ||
|nearest_refseq=NM_014314 | |nearest_refseq=NM_014314 | ||
|nearest_unigene=Hs.190622 | |nearest_unigene=Hs.190622 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=32526301 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000379883.2 NM_014314 uc003zra.4 AF038963 BC107731 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100389.1 | |tss_id=hg_100389.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O95786 Q3B797 | ||
}} | }} | ||
Revision as of 17:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000379883.2 NM_014314 uc003zra.4 AF038963 BC107731 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000379883.2:0 NM_014314:0 uc003zra.4:0 AF038963:0 BC107731:0 BC132786:30 BC136610:30 ENST00000379868.5:94 uc064smz.1:94 BC070029:94 BX647917:106 AK315040:107 AK301678:107 AB385150:135 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_014314 |
| Entrez ID: | 23586 |
| Nearest Unigene: | Hs.190622 |
| Nearest Refseq: | NM_014314 |
| Nearest Ensembl: | ENSG00000107201 |
| Gene Name: | DEXD/H-box helicase 58 |
| Gene Alias: | RIG-I |
| Gene Description: | DExD/H-box helicase 58 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
