Difference between revisions of "TSS:Hg 100417.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=39 |entrez_id=55234 |gc_percent=0.61194 |gene_alias=BWD|SMU-1|fSAP57 |gene_description=DNA replication regulator and spliceosom...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SMU-1= | ||
| + | |all_trans=ENST00000397149.3:0 uc003zsf.2:0 AK225559:0 AK225587:0 AK304767:0 BC002876:3 EF011613:3 AK001667:9 NM_018225:-17 BC110654:-21 KJ894162:45 DQ893005:47 DQ896251:47 CU678268:47 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=33076699 | ||
|entrez_id=55234 | |entrez_id=55234 | ||
| + | |fSAP57= | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=BWD|SMU-1|fSAP57 | |gene_alias=BWD|SMU-1|fSAP57 | ||
|gene_description=DNA replication regulator and spliceosomal factor | |gene_description=DNA replication regulator and spliceosomal factor | ||
| − | |gene_name=SMU1 | + | |gene_id=55234 |
| + | |gene_name=smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) | ||
| + | |gene_source=HGNC:18247 | ||
| + | |gene_symbol=SMU1 | ||
| + | |gene_synonyms=BWD FLJ10805 SMU-1 fSAP57 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18247 | ||
|nearest_ensembl=ENSG00000122692 | |nearest_ensembl=ENSG00000122692 | ||
|nearest_promoter_id=NM_018225 | |nearest_promoter_id=NM_018225 | ||
|nearest_refseq=NM_018225 | |nearest_refseq=NM_018225 | ||
|nearest_unigene=Hs.655351 | |nearest_unigene=Hs.655351 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=33076654 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000397149.3 uc003zsf.2 AK225559 AK225587 AK304767 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100417.1 | |tss_id=hg_100417.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0MNN4 Q2TAY7 | ||
}} | }} | ||
Revision as of 17:08, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000397149.3 uc003zsf.2 AK225559 AK225587 AK304767 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000397149.3:0 uc003zsf.2:0 AK225559:0 AK225587:0 AK304767:0 BC002876:3 EF011613:3 AK001667:9 NM_018225:-17 BC110654:-21 KJ894162:45 DQ893005:47 DQ896251:47 CU678268:47 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_018225 |
| Entrez ID: | 55234 |
| Nearest Unigene: | Hs.655351 |
| Nearest Refseq: | NM_018225 |
| Nearest Ensembl: | ENSG00000122692 |
| Gene Name: | smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) |
| Gene Alias: | BWD |
| Gene Description: | DNA replication regulator and spliceosomal factor |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
