Difference between revisions of "TSS:Hg 100440.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=196 |entrez_id=2683 |gc_percent=0.746269 |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 |gene_description="beta-1,4-galact...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDG2D= | ||
| + | |GGTB2= | ||
| + | |GT1= | ||
| + | |GTB= | ||
| + | |all_trans=KJ901453:0 X55415:0 AB590749:0 AK316294:4 AK296928:-14 AK312797:-25 HG765099:-31 HG765101:-31 D29805:-61 X13223:-61 X14085:-61 M22921:-64 U10474:-64 ENST00000535206.5:-184 ENST00000379731.4:-184 uc064soj.1:-184 uc003zsg.3:-184 BC045773:-184 NM_001497:-186 U10473:327 | ||
| + | |beta4Gal-T1= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=196 | |distance_to_tss=196 | ||
| + | |end=33167172 | ||
|entrez_id=2683 | |entrez_id=2683 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
|gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 | |gene_alias=B4GAL-T1|CDG2D|GGTB2|GT1|GTB|beta4Gal-T1 | ||
|gene_description="beta-1,4-galactosyltransferase 1" | |gene_description="beta-1,4-galactosyltransferase 1" | ||
| − | |gene_name=B4GALT1 | + | |gene_id=2683 |
| + | |gene_name="beta-1,4-galactosyltransferase 1" | ||
| + | |gene_source=HGNC:924 | ||
| + | |gene_symbol=B4GALT1 | ||
| + | |gene_synonyms=beta4Gal-T1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:924 | ||
|nearest_ensembl=ENSG00000086062 | |nearest_ensembl=ENSG00000086062 | ||
|nearest_promoter_id=NM_001497 | |nearest_promoter_id=NM_001497 | ||
|nearest_refseq=NM_001497 | |nearest_refseq=NM_001497 | ||
|nearest_unigene=Hs.272011 | |nearest_unigene=Hs.272011 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=33167151 | ||
| + | |strand=- | ||
|tata_box="-30(CTTCTTAAAGCG,+,0.00)" | |tata_box="-30(CTTCTTAAAGCG,+,0.00)" | ||
| + | |transcript_name=KJ901453 X55415 AB590749 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100440.1 | |tss_id=hg_100440.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:09, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | KJ901453 X55415 AB590749 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | KJ901453:0 X55415:0 AB590749:0 AK316294:4 AK296928:-14 AK312797:-25 HG765099:-31 HG765101:-31 D29805:-61 X13223:-61 X14085:-61 M22921:-64 U10474:-64 ENST00000535206.5:-184 ENST00000379731.4:-184 uc064soj.1:-184 uc003zsg.3:-184 BC045773:-184 NM_001497:-186 U10473:327 |
TATA-Box annotation
| Distance to TSS: | 196 |
|---|---|
| Nearest PromoterID: | NM_001497 |
| Entrez ID: | 2683 |
| Nearest Unigene: | Hs.272011 |
| Nearest Refseq: | NM_001497 |
| Nearest Ensembl: | ENSG00000086062 |
| Gene Name: | "beta-1,4-galactosyltransferase 1" |
| Gene Alias: | B4GAL-T1 |
| Gene Description: | "beta-1,4-galactosyltransferase 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-30(CTTCTTAAAGCG,+,0.00)" |
