Difference between revisions of "TSS:Hg 100488.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=-248 |entrez_id=55833 |gc_percent=0.552239 |gene_alias=UBAP-2 |gene_description=ubiquitin associated protein 2 |gene_name=UBAP2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000360802.5:233 ENST00000539807.5:233 ENST00000412543.5:233 NM_018449:233 NM_001282529:233 uc003ztq.1:233 uc064sra.1:233 uc064srd.1:233 AK302335:253 BC111409:280 ENST00000379238.5:281 uc064sqx.1:281 ENST00000629575.2:295 ENST00000459988.1:295 uc064sqz.1:295 uc064srg.1:295 AK303493:295 AK299183:295 AK294952:295 CR933678:295 AK302754:297 ENST00000480885.5:310 uc064srf.1:310 AB209911:310 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=233 | ||
|distance_to_tss=-248 | |distance_to_tss=-248 | ||
| + | |end=34049213 | ||
|entrez_id=55833 | |entrez_id=55833 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
|gene_alias=UBAP-2 | |gene_alias=UBAP-2 | ||
|gene_description=ubiquitin associated protein 2 | |gene_description=ubiquitin associated protein 2 | ||
| − | |gene_name=UBAP2 | + | |gene_id=55833 |
| + | |gene_name=ubiquitin associated protein 2 | ||
| + | |gene_source=HGNC:14185 | ||
| + | |gene_symbol=UBAP2 | ||
| + | |gene_synonyms=FLJ22435 KIAA1491 bA176F3.5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14185 | ||
|nearest_ensembl=ENSG00000137073 | |nearest_ensembl=ENSG00000137073 | ||
|nearest_promoter_id=NM_018449 | |nearest_promoter_id=NM_018449 | ||
|nearest_refseq=NM_018449 | |nearest_refseq=NM_018449 | ||
|nearest_unigene=Hs.493739 | |nearest_unigene=Hs.493739 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=34049181 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000360802.5 ENST00000539807.5 ENST00000412543.5 NM_018449 NM_001282529 uc003ztq.1 uc064sra.1 uc064srd.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100488.1 | |tss_id=hg_100488.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A2A305 F5H2U4 Q5T6F2 Q9P0H6 | ||
}} | }} | ||
Revision as of 17:10, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000360802.5 ENST00000539807.5 ENST00000412543.5 NM_018449 NM_001282529 uc003ztq.1 uc064sra.1 uc064srd.1 |
|---|---|
| Distance: | 233 |
| Num_trans: | 24 |
| All_trans: | ENST00000360802.5:233 ENST00000539807.5:233 ENST00000412543.5:233 NM_018449:233 NM_001282529:233 uc003ztq.1:233 uc064sra.1:233 uc064srd.1:233 AK302335:253 BC111409:280 ENST00000379238.5:281 uc064sqx.1:281 ENST00000629575.2:295 ENST00000459988.1:295 uc064sqz.1:295 uc064srg.1:295 AK303493:295 AK299183:295 AK294952:295 CR933678:295 AK302754:297 ENST00000480885.5:310 uc064srf.1:310 AB209911:310 |
TATA-Box annotation
| Distance to TSS: | -248 |
|---|---|
| Nearest PromoterID: | NM_018449 |
| Entrez ID: | 55833 |
| Nearest Unigene: | Hs.493739 |
| Nearest Refseq: | NM_018449 |
| Nearest Ensembl: | ENSG00000137073 |
| Gene Name: | ubiquitin associated protein 2 |
| Gene Alias: | UBAP-2 |
| Gene Description: | ubiquitin associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
