Difference between revisions of "TSS:Hg 100512.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=85 |entrez_id=203259 |gc_percent=0.721393 |gene_alias=C9orf25 |gene_description=family with sequence similarity 219 member A |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000379089.5:-58 ENST00000379087.5:-58 ENST00000379084.5:-58 ENST00000379081.5:-58 ENST00000379080.5:-58 ENST00000422409.5:-58 ENST00000379078.1:-58 uc064srz.1:-58 uc064ssa.1:-58 uc064ssb.1:-58 uc064ssc.1:-58 uc064ssd.1:-58 uc064sse.1:-58 uc064ssf.1:-58 AK299882:-71 ENST00000445726.5:-76 ENST00000297620.8:-76 NM_001184945:-76 NM_001184943:-76 NM_147202:-76 NM_001184942:-76 NM_001184941:-76 NM_001184940:-76 uc011lok.3:-76 uc003zuj.4:-76 AK123887:-76 BC041009:-76 AK096350:-76 AK294054:-76 KJ895817:213 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=-58 | ||
|distance_to_tss=85 | |distance_to_tss=85 | ||
| + | |end=34458494 | ||
|entrez_id=203259 | |entrez_id=203259 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=C9orf25 | |gene_alias=C9orf25 | ||
|gene_description=family with sequence similarity 219 member A | |gene_description=family with sequence similarity 219 member A | ||
| − | |gene_name=FAM219A | + | |gene_id=203259 |
| + | |gene_name=family with sequence similarity 219 member A | ||
| + | |gene_source=HGNC:19920 | ||
| + | |gene_symbol=FAM219A | ||
| + | |gene_synonyms=FLJ39031 bA573M23.5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19920 | ||
|nearest_ensembl=ENSG00000164970 | |nearest_ensembl=ENSG00000164970 | ||
|nearest_promoter_id=NM_147202 | |nearest_promoter_id=NM_147202 | ||
|nearest_refseq=NM_147202 | |nearest_refseq=NM_147202 | ||
|nearest_unigene=Hs.493771 | |nearest_unigene=Hs.493771 | ||
| + | |num_trans=30 | ||
| + | |species=human | ||
| + | |start=34458476 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1 uc064srz.1 uc064ssa.1 uc064ssb.1 uc064ssc.1 uc064ssd.1 uc064sse.1 uc064ssf.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100512.1 | |tss_id=hg_100512.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MRV9 A0A0A0MRW0 A0A0A0MRW1 A0A0A0MRW2 A0A0A0MRW3 Q5T586 Q5T593 | ||
}} | }} | ||
Revision as of 17:10, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000379089.5 ENST00000379087.5 ENST00000379084.5 ENST00000379081.5 ENST00000379080.5 ENST00000422409.5 ENST00000379078.1 uc064srz.1 uc064ssa.1 uc064ssb.1 uc064ssc.1 uc064ssd.1 uc064sse.1 uc064ssf.1 |
|---|---|
| Distance: | -58 |
| Num_trans: | 30 |
| All_trans: | ENST00000379089.5:-58 ENST00000379087.5:-58 ENST00000379084.5:-58 ENST00000379081.5:-58 ENST00000379080.5:-58 ENST00000422409.5:-58 ENST00000379078.1:-58 uc064srz.1:-58 uc064ssa.1:-58 uc064ssb.1:-58 uc064ssc.1:-58 uc064ssd.1:-58 uc064sse.1:-58 uc064ssf.1:-58 AK299882:-71 ENST00000445726.5:-76 ENST00000297620.8:-76 NM_001184945:-76 NM_001184943:-76 NM_147202:-76 NM_001184942:-76 NM_001184941:-76 NM_001184940:-76 uc011lok.3:-76 uc003zuj.4:-76 AK123887:-76 BC041009:-76 AK096350:-76 AK294054:-76 KJ895817:213 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_147202 |
| Entrez ID: | 203259 |
| Nearest Unigene: | Hs.493771 |
| Nearest Refseq: | NM_147202 |
| Nearest Ensembl: | ENSG00000164970 |
| Gene Name: | family with sequence similarity 219 member A |
| Gene Alias: | C9orf25 |
| Gene Description: | family with sequence similarity 219 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
