Difference between revisions of "TSS:Hg 100545.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=284 |entrez_id=6366 |gc_percent=0.606965 |gene_alias=6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 |gene_description=C-C motif chemokine liga...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CKb9= | ||
| + | |ECL= | ||
| + | |SCYA21= | ||
| + | |SLC= | ||
| + | |TCA4= | ||
| + | |all_trans=AF001979:-178 CR450326:-178 DQ892048:-179 KJ892111:-179 DQ895242:-179 AB463486:-179 ENST00000378792.1:-181 uc064sux.1:-181 U88320:-183 AY358887:-183 BC027918:-185 ENST00000259607.6:-236 uc003zvo.5:-236 AB002409:-236 AK311901:-248 NM_002989:-279 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-178 | ||
|distance_to_tss=284 | |distance_to_tss=284 | ||
| + | |end=34709888 | ||
|entrez_id=6366 | |entrez_id=6366 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 | |gene_alias=6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 | ||
|gene_description=C-C motif chemokine ligand 21 | |gene_description=C-C motif chemokine ligand 21 | ||
| − | |gene_name=CCL21 | + | |gene_id=6366 |
| + | |gene_name=C-C motif chemokine ligand 21 | ||
| + | |gene_source=HGNC:10620 | ||
| + | |gene_symbol=CCL21 | ||
| + | |gene_synonyms=6Ckine CKb9 ECL SLC TCA4 exodus-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10620 | ||
|nearest_ensembl=ENSG00000137077 | |nearest_ensembl=ENSG00000137077 | ||
|nearest_promoter_id=NM_002989 | |nearest_promoter_id=NM_002989 | ||
|nearest_refseq=NM_002989 | |nearest_refseq=NM_002989 | ||
|nearest_unigene=Hs.57907 | |nearest_unigene=Hs.57907 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=34709877 | ||
| + | |strand=- | ||
| + | |transcript_name=AF001979 CR450326 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100545.1 | |tss_id=hg_100545.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF001979 CR450326 |
|---|---|
| Distance: | -178 |
| Num_trans: | 16 |
| All_trans: | AF001979:-178 CR450326:-178 DQ892048:-179 KJ892111:-179 DQ895242:-179 AB463486:-179 ENST00000378792.1:-181 uc064sux.1:-181 U88320:-183 AY358887:-183 BC027918:-185 ENST00000259607.6:-236 uc003zvo.5:-236 AB002409:-236 AK311901:-248 NM_002989:-279 |
TATA-Box annotation
| Distance to TSS: | 284 |
|---|---|
| Nearest PromoterID: | NM_002989 |
| Entrez ID: | 6366 |
| Nearest Unigene: | Hs.57907 |
| Nearest Refseq: | NM_002989 |
| Nearest Ensembl: | ENSG00000137077 |
| Gene Name: | C-C motif chemokine ligand 21 |
| Gene Alias: | 6Ckine |
| Gene Description: | C-C motif chemokine ligand 21 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
