Difference between revisions of "TSS:Hg 100719.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=212 |entrez_id=5079 |gc_percent=0.567164 |gene_alias=ALL3|BSAP |gene_description=paired box 5 |gene_name=PAX5 |gene_type=protein...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BSAP= | ||
| + | |all_trans=ENST00000358127.8:77 uc003zzo.3:77 M96944:156 NM_001280554:-206 NM_001280553:-206 NM_001280552:-206 NM_001280551:-206 NM_001280549:-206 NM_001280548:-206 NM_001280547:-206 NM_001280555:-206 NM_016734:-206 NM_001280556:-206 NM_001280550:-206 NR_103999:-206 NR_104000:-206 ENST00000377853.6:221 ENST00000377840.6:221 ENST00000377852.6:221 ENST00000523241.5:221 ENST00000520154.5:221 uc064tbd.1:221 uc010mlo.3:221 uc010mlp.3:221 uc010mls.3:221 uc010mlr.3:221 AY463952:221 AY463953:221 AY463954:221 AY463955:221 AY463956:221 AY463957:221 ENST00000520281.5:231 ENST00000446742.5:231 ENST00000522003.5:231 ENST00000523145.5:231 ENST00000523493.5:231 ENST00000414447.5:231 ENST00000377847.6:231 uc011lpw.3:231 uc011lpz.3:231 uc011lpx.3:231 uc011lqc.3:231 uc011lqa.3:231 uc011lpy.3:231 uc064tbe.1:231 FJ626419:231 FJ626420:231 FJ626421:231 FJ626422:231 FJ626423:231 FJ626424:231 FJ626425:231 BC156189:231 BC156927:231 AB529192:231 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=77 | ||
|distance_to_tss=212 | |distance_to_tss=212 | ||
| + | |end=37034273 | ||
|entrez_id=5079 | |entrez_id=5079 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
|gene_alias=ALL3|BSAP | |gene_alias=ALL3|BSAP | ||
|gene_description=paired box 5 | |gene_description=paired box 5 | ||
| − | |gene_name=PAX5 | + | |gene_id=5079 |
| + | |gene_name=paired box 5 | ||
| + | |gene_source=HGNC:8619 | ||
| + | |gene_symbol=PAX5 | ||
| + | |gene_synonyms=BSAP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8619 | ||
|nearest_ensembl=ENSG00000196092 | |nearest_ensembl=ENSG00000196092 | ||
|nearest_promoter_id=NM_001280549 | |nearest_promoter_id=NM_001280549 | ||
|nearest_refseq=NM_016734 | |nearest_refseq=NM_016734 | ||
|nearest_unigene=Hs.654464 | |nearest_unigene=Hs.654464 | ||
| + | |num_trans=56 | ||
| + | |species=human | ||
| + | |start=37034261 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000358127.8 uc003zzo.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100719.1 | |tss_id=hg_100719.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q02548 | ||
}} | }} | ||
Revision as of 17:15, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000358127.8 uc003zzo.3 |
|---|---|
| Distance: | 77 |
| Num_trans: | 56 |
| All_trans: | ENST00000358127.8:77 uc003zzo.3:77 M96944:156 NM_001280554:-206 NM_001280553:-206 NM_001280552:-206 NM_001280551:-206 NM_001280549:-206 NM_001280548:-206 NM_001280547:-206 NM_001280555:-206 NM_016734:-206 NM_001280556:-206 NM_001280550:-206 NR_103999:-206 NR_104000:-206 ENST00000377853.6:221 ENST00000377840.6:221 ENST00000377852.6:221 ENST00000523241.5:221 ENST00000520154.5:221 uc064tbd.1:221 uc010mlo.3:221 uc010mlp.3:221 uc010mls.3:221 uc010mlr.3:221 AY463952:221 AY463953:221 AY463954:221 AY463955:221 AY463956:221 AY463957:221 ENST00000520281.5:231 ENST00000446742.5:231 ENST00000522003.5:231 ENST00000523145.5:231 ENST00000523493.5:231 ENST00000414447.5:231 ENST00000377847.6:231 uc011lpw.3:231 uc011lpz.3:231 uc011lpx.3:231 uc011lqc.3:231 uc011lqa.3:231 uc011lpy.3:231 uc064tbe.1:231 FJ626419:231 FJ626420:231 FJ626421:231 FJ626422:231 FJ626423:231 FJ626424:231 FJ626425:231 BC156189:231 BC156927:231 AB529192:231 |
TATA-Box annotation
| Distance to TSS: | 212 |
|---|---|
| Nearest PromoterID: | NM_001280549 |
| Entrez ID: | 5079 |
| Nearest Unigene: | Hs.654464 |
| Nearest Refseq: | NM_016734 |
| Nearest Ensembl: | ENSG00000196092 |
| Gene Name: | paired box 5 |
| Gene Alias: | ALL3 |
| Gene Description: | paired box 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
