Difference between revisions of "TSS:Hg 100746.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=190 |entrez_id=51010 |gc_percent=0.691542 |gene_alias=CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 |gene_description=exosome c...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PCH1B= | ||
| + | |RRP40= | ||
| + | |Rrp40p= | ||
| + | |all_trans=AF229833:108 AF151860:-110 CU679169:-137 KJ893776:-137 KJ898800:-137 DQ891938:-137 DQ895125:-137 BC008880:-139 AB528623:-141 BC002437:-149 ENST00000327304.9:-150 uc004aal.4:-150 AK290864:-150 ENST00000465860.5:152 ENST00000496910.1:152 uc064tdl.1:152 uc064tdm.1:152 ENST00000465229.5:-154 uc064tdg.1:-154 AK289571:-154 ENST00000396521.3:-157 uc004aam.4:-157 AF281132:-161 ENST00000490516.5:184 uc064tdi.1:184 NM_001002269:-185 NM_016042:-185 | ||
| + | |bA3J10.7= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=108 | ||
|distance_to_tss=190 | |distance_to_tss=190 | ||
| + | |end=37784907 | ||
|entrez_id=51010 | |entrez_id=51010 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 | |gene_alias=CGI-102|PCH1B|RRP40|Rrp40p|bA3J10.7|hRrp-40|p10 | ||
|gene_description=exosome component 3 | |gene_description=exosome component 3 | ||
| − | |gene_name=EXOSC3 | + | |gene_id=51010 |
| + | |gene_name=exosome component 3 | ||
| + | |gene_source=HGNC:17944 | ||
| + | |gene_symbol=EXOSC3 | ||
| + | |gene_synonyms=CGI-102 RRP40 Rrp40p hRrp-40 hRrp40p p10 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hRrp-40= | ||
| + | |hgnc_mgi_id=HGNC:17944 | ||
|nearest_ensembl=ENSG00000107371 | |nearest_ensembl=ENSG00000107371 | ||
|nearest_promoter_id=NM_001002269 | |nearest_promoter_id=NM_001002269 | ||
|nearest_refseq=NM_016042 | |nearest_refseq=NM_016042 | ||
|nearest_unigene=Hs.602571 | |nearest_unigene=Hs.602571 | ||
| + | |num_trans=27 | ||
| + | |p10= | ||
| + | |species=human | ||
| + | |start=37784896 | ||
| + | |strand=- | ||
| + | |transcript_name=AF229833 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100746.1 | |tss_id=hg_100746.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9NYS3 | ||
}} | }} | ||
Revision as of 18:13, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF229833 |
|---|---|
| Distance: | 108 |
| Num_trans: | 27 |
| All_trans: | AF229833:108 AF151860:-110 CU679169:-137 KJ893776:-137 KJ898800:-137 DQ891938:-137 DQ895125:-137 BC008880:-139 AB528623:-141 BC002437:-149 ENST00000327304.9:-150 uc004aal.4:-150 AK290864:-150 ENST00000465860.5:152 ENST00000496910.1:152 uc064tdl.1:152 uc064tdm.1:152 ENST00000465229.5:-154 uc064tdg.1:-154 AK289571:-154 ENST00000396521.3:-157 uc004aam.4:-157 AF281132:-161 ENST00000490516.5:184 uc064tdi.1:184 NM_001002269:-185 NM_016042:-185 |
TATA-Box annotation
| Distance to TSS: | 190 |
|---|---|
| Nearest PromoterID: | NM_001002269 |
| Entrez ID: | 51010 |
| Nearest Unigene: | Hs.602571 |
| Nearest Refseq: | NM_016042 |
| Nearest Ensembl: | ENSG00000107371 |
| Gene Name: | exosome component 3 |
| Gene Alias: | CGI-102 |
| Gene Description: | exosome component 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
