Difference between revisions of "TSS:Hg 100796.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-15 |entrez_id=169693 |gc_percent=0.497512 |gene_alias=C9orf71 |gene_description=transmembrane protein 252 |gene_name=TMEM252 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000377311.3:13 NM_153237:13 uc004agt.4:13 BC029780:13 KJ895755:66 DQ890797:66 DQ893952:66 | ||
| + | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| + | |distance=13 | ||
|distance_to_tss=-15 | |distance_to_tss=-15 | ||
| + | |end=68540884 | ||
|entrez_id=169693 | |entrez_id=169693 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
|gene_alias=C9orf71 | |gene_alias=C9orf71 | ||
|gene_description=transmembrane protein 252 | |gene_description=transmembrane protein 252 | ||
| − | |gene_name=TMEM252 | + | |gene_id=169693 |
| + | |gene_name=transmembrane protein 252 | ||
| + | |gene_source=HGNC:28537 | ||
| + | |gene_symbol=TMEM252 | ||
| + | |gene_synonyms=MGC34760 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28537 | ||
|nearest_ensembl=ENSG00000181778 | |nearest_ensembl=ENSG00000181778 | ||
|nearest_promoter_id=NM_153237 | |nearest_promoter_id=NM_153237 | ||
|nearest_refseq=NM_153237 | |nearest_refseq=NM_153237 | ||
|nearest_unigene=Hs.663056 | |nearest_unigene=Hs.663056 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=68540879 | ||
| + | |strand=- | ||
|tata_box="-35(GAGCATATAAAG,-,0.00),-33(GCATATAAAGCT,+,0.00)" | |tata_box="-35(GAGCATATAAAG,-,0.00),-33(GCATATAAAGCT,+,0.00)" | ||
| + | |transcript_name=ENST00000377311.3 NM_153237 uc004agt.4 BC029780 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100796.1 | |tss_id=hg_100796.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8N6L7 | ||
}} | }} | ||
Revision as of 18:15, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000377311.3 NM_153237 uc004agt.4 BC029780 |
|---|---|
| Distance: | 13 |
| Num_trans: | 7 |
| All_trans: | ENST00000377311.3:13 NM_153237:13 uc004agt.4:13 BC029780:13 KJ895755:66 DQ890797:66 DQ893952:66 |
TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NM_153237 |
| Entrez ID: | 169693 |
| Nearest Unigene: | Hs.663056 |
| Nearest Refseq: | NM_153237 |
| Nearest Ensembl: | ENSG00000181778 |
| Gene Name: | transmembrane protein 252 |
| Gene Alias: | C9orf71 |
| Gene Description: | transmembrane protein 252 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GAGCATATAAAG,-,0.00),-33(GCATATAAAGCT,+,0.00)" |
