Difference between revisions of "TSS:Hg 100838.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=334 |entrez_id=23137 |gc_percent=0.681592 |gene_alias=SMC5L1 |gene_description=structural maintenance of chromosomes 5 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_039990:416 BC040840:416 ENST00000594708.1:424 uc004ahq.2:424 AK124136:424 CR936772:432 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=416 | ||
|distance_to_tss=334 | |distance_to_tss=334 | ||
| + | |end=70259303 | ||
|entrez_id=23137 | |entrez_id=23137 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=SMC5L1 | |gene_alias=SMC5L1 | ||
|gene_description=structural maintenance of chromosomes 5 | |gene_description=structural maintenance of chromosomes 5 | ||
| − | |gene_name=SMC5 | + | |gene_id=100507299 |
| + | |gene_name=SMC5 antisense RNA 1 (head to head) | ||
| + | |gene_source=HGNC:48718 | ||
| + | |gene_symbol=SMC5-AS1 | ||
| + | |gene_synonyms=MAMDC2-AS2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:48718 | ||
|nearest_ensembl=ENSG00000198887 | |nearest_ensembl=ENSG00000198887 | ||
|nearest_promoter_id=NM_015110 | |nearest_promoter_id=NM_015110 | ||
|nearest_refseq=NM_015110 | |nearest_refseq=NM_015110 | ||
|nearest_unigene=Hs.534189 | |nearest_unigene=Hs.534189 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=70259289 | ||
| + | |strand=- | ||
| + | |transcript_name=NR_039990 BC040840 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_100838.1 | |tss_id=hg_100838.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:17, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NR_039990 BC040840 |
|---|---|
| Distance: | 416 |
| Num_trans: | 6 |
| All_trans: | NR_039990:416 BC040840:416 ENST00000594708.1:424 uc004ahq.2:424 AK124136:424 CR936772:432 |
TATA-Box annotation
| Distance to TSS: | 334 |
|---|---|
| Nearest PromoterID: | NM_015110 |
| Entrez ID: | 23137 |
| Nearest Unigene: | Hs.534189 |
| Nearest Refseq: | NM_015110 |
| Nearest Ensembl: | ENSG00000198887 |
| Gene Name: | SMC5 antisense RNA 1 (head to head) |
| Gene Alias: | SMC5L1 |
| Gene Description: | structural maintenance of chromosomes 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
