Difference between revisions of "TSS:Hg 101027.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=128 |entrez_id=138199 |gc_percent=0.781095 |gene_alias=C9orf41|UPF0586 |gene_description=carnosine N-methyltransferase 1 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |UPF0586= | ||
| + | |all_trans=AK299691:2 HQ447650:34 KJ895522:34 EU832520:34 EU832602:34 CU689816:34 ENST00000376834.7:-64 uc004ajq.4:-64 BC034033:-64 BX647386:76 ENST00000376830.3:-93 uc064ttv.1:-93 NM_152420:-100 NR_135282:-100 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=2 | ||
|distance_to_tss=128 | |distance_to_tss=128 | ||
| + | |end=75028330 | ||
|entrez_id=138199 | |entrez_id=138199 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=C9orf41|UPF0586 | |gene_alias=C9orf41|UPF0586 | ||
|gene_description=carnosine N-methyltransferase 1 | |gene_description=carnosine N-methyltransferase 1 | ||
| − | |gene_name=CARNMT1 | + | |gene_id=138199 |
| + | |gene_name=carnosine N-methyltransferase 1 | ||
| + | |gene_source=HGNC:23435 | ||
| + | |gene_symbol=CARNMT1 | ||
| + | |gene_synonyms=FLJ25795 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23435 | ||
|nearest_ensembl=ENSG00000156017 | |nearest_ensembl=ENSG00000156017 | ||
|nearest_promoter_id=NM_152420 | |nearest_promoter_id=NM_152420 | ||
|nearest_refseq=NM_152420 | |nearest_refseq=NM_152420 | ||
|nearest_unigene=Hs.567688 | |nearest_unigene=Hs.567688 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=75028274 | ||
| + | |strand=- | ||
| + | |transcript_name=AK299691 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101027.1 | |tss_id=hg_101027.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DSD4 | ||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK299691 |
|---|---|
| Distance: | 2 |
| Num_trans: | 14 |
| All_trans: | AK299691:2 HQ447650:34 KJ895522:34 EU832520:34 EU832602:34 CU689816:34 ENST00000376834.7:-64 uc004ajq.4:-64 BC034033:-64 BX647386:76 ENST00000376830.3:-93 uc064ttv.1:-93 NM_152420:-100 NR_135282:-100 |
TATA-Box annotation
| Distance to TSS: | 128 |
|---|---|
| Nearest PromoterID: | NM_152420 |
| Entrez ID: | 138199 |
| Nearest Unigene: | Hs.567688 |
| Nearest Refseq: | NM_152420 |
| Nearest Ensembl: | ENSG00000156017 |
| Gene Name: | carnosine N-methyltransferase 1 |
| Gene Alias: | C9orf41 |
| Gene Description: | carnosine N-methyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
