Difference between revisions of "TSS:Hg 101028.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=9 |entrez_id=138199 |gc_percent=0.721393 |gene_alias=C9orf41|UPF0586 |gene_description=carnosine N-methyltransferase 1 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |UPF0586= | ||
| + | |all_trans=ENST00000376834.7:0 ENST00000376830.3:0 NM_152420:0 NR_135282:0 uc004ajq.4:0 uc064ttv.1:0 BC034033:0 AK299691:119 HQ447650:151 KJ895522:151 EU832520:151 EU832602:151 CU689816:151 BX647386:193 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=9 | |distance_to_tss=9 | ||
| + | |end=75028450 | ||
|entrez_id=138199 | |entrez_id=138199 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=C9orf41|UPF0586 | |gene_alias=C9orf41|UPF0586 | ||
|gene_description=carnosine N-methyltransferase 1 | |gene_description=carnosine N-methyltransferase 1 | ||
| − | |gene_name=CARNMT1 | + | |gene_id=138199 |
| + | |gene_name=carnosine N-methyltransferase 1 | ||
| + | |gene_source=HGNC:23435 | ||
| + | |gene_symbol=CARNMT1 | ||
| + | |gene_synonyms=FLJ25795 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23435 | ||
|nearest_ensembl=ENSG00000156017 | |nearest_ensembl=ENSG00000156017 | ||
|nearest_promoter_id=NM_152420 | |nearest_promoter_id=NM_152420 | ||
|nearest_refseq=NM_152420 | |nearest_refseq=NM_152420 | ||
|nearest_unigene=Hs.567688 | |nearest_unigene=Hs.567688 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=75028391 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000376834.7 ENST00000376830.3 NM_152420 NR_135282 uc004ajq.4 uc064ttv.1 BC034033 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101028.1 | |tss_id=hg_101028.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T8U9 Q8N4J0 | ||
}} | }} | ||
Revision as of 18:25, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376834.7 ENST00000376830.3 NM_152420 NR_135282 uc004ajq.4 uc064ttv.1 BC034033 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000376834.7:0 ENST00000376830.3:0 NM_152420:0 NR_135282:0 uc004ajq.4:0 uc064ttv.1:0 BC034033:0 AK299691:119 HQ447650:151 KJ895522:151 EU832520:151 EU832602:151 CU689816:151 BX647386:193 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_152420 |
| Entrez ID: | 138199 |
| Nearest Unigene: | Hs.567688 |
| Nearest Refseq: | NM_152420 |
| Nearest Ensembl: | ENSG00000156017 |
| Gene Name: | carnosine N-methyltransferase 1 |
| Gene Alias: | C9orf41 |
| Gene Description: | carnosine N-methyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
