Difference between revisions of "TSS:Hg 10120.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=-146 |entrez_id=473 |gc_percent=0.860697 |gene_alias=ARG|ARP|ATN1L|DNB1|NEDBEH |gene_description=arginine-glutamic acid dipepti...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ARP= | ||
| + | |ATN1L= | ||
| + | |DNB1= | ||
| + | |NEDBEH= | ||
| + | |all_trans=NM_001042682:132 ENST00000476556.5:153 ENST00000492766.5:153 uc001apd.4:153 uc057bzd.1:153 AF016005:153 ENST00000465125.1:-387 uc057bze.1:-387 ENST00000460659.5:400 uc057bzc.1:400 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=132 | ||
|distance_to_tss=-146 | |distance_to_tss=-146 | ||
| + | |end=8423847 | ||
|entrez_id=473 | |entrez_id=473 | ||
|gc_percent=0.860697 | |gc_percent=0.860697 | ||
|gene_alias=ARG|ARP|ATN1L|DNB1|NEDBEH | |gene_alias=ARG|ARP|ATN1L|DNB1|NEDBEH | ||
|gene_description=arginine-glutamic acid dipeptide repeats | |gene_description=arginine-glutamic acid dipeptide repeats | ||
| − | |gene_name=RERE | + | |gene_id=473 |
| + | |gene_name=arginine-glutamic acid dipeptide (RE) repeats | ||
| + | |gene_source=HGNC:9965 | ||
| + | |gene_symbol=RERE | ||
| + | |gene_synonyms=ARG ARP DNB1 KIAA0458 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9965 | ||
|nearest_ensembl=ENSG00000142599 | |nearest_ensembl=ENSG00000142599 | ||
|nearest_promoter_id=NM_001042682 | |nearest_promoter_id=NM_001042682 | ||
|nearest_refseq=NM_012102 | |nearest_refseq=NM_012102 | ||
|nearest_unigene=Hs.463041 | |nearest_unigene=Hs.463041 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=8423818 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001042682 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10120.1 | |tss_id=hg_10120.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9P2R6 | ||
}} | }} | ||
Revision as of 18:33, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001042682 |
|---|---|
| Distance: | 132 |
| Num_trans: | 10 |
| All_trans: | NM_001042682:132 ENST00000476556.5:153 ENST00000492766.5:153 uc001apd.4:153 uc057bzd.1:153 AF016005:153 ENST00000465125.1:-387 uc057bze.1:-387 ENST00000460659.5:400 uc057bzc.1:400 |
TATA-Box annotation
| Distance to TSS: | -146 |
|---|---|
| Nearest PromoterID: | NM_001042682 |
| Entrez ID: | 473 |
| Nearest Unigene: | Hs.463041 |
| Nearest Refseq: | NM_012102 |
| Nearest Ensembl: | ENSG00000142599 |
| Gene Name: | arginine-glutamic acid dipeptide (RE) repeats |
| Gene Alias: | ARG |
| Gene Description: | arginine-glutamic acid dipeptide repeats |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.860697 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
