Difference between revisions of "TSS:Hg 101227.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=-318 |entrez_id=2619 |gc_percent=0.636816 |gene_alias=- |gene_description=growth arrest specific 1 |gene_name=GAS1 |gene_type=pr...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000298743.8:308 NM_002048:308 uc004aox.5:308 L13698:308 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=308 | ||
|distance_to_tss=-318 | |distance_to_tss=-318 | ||
| + | |end=86947518 | ||
|entrez_id=2619 | |entrez_id=2619 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=growth arrest specific 1 | |gene_description=growth arrest specific 1 | ||
| − | |gene_name=GAS1 | + | |gene_id=2619 |
| + | |gene_name=growth arrest specific 1 | ||
| + | |gene_source=HGNC:4165 | ||
| + | |gene_symbol=GAS1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4165 | ||
|nearest_ensembl=ENSG00000180447 | |nearest_ensembl=ENSG00000180447 | ||
|nearest_promoter_id=NM_002048 | |nearest_promoter_id=NM_002048 | ||
|nearest_refseq=NM_002048 | |nearest_refseq=NM_002048 | ||
|nearest_unigene=Hs.65029 | |nearest_unigene=Hs.65029 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=86947496 | ||
| + | |strand=- | ||
|tata_box="-30(GTATTTAAAGCC,+,0.00)" | |tata_box="-30(GTATTTAAAGCC,+,0.00)" | ||
| + | |transcript_name=ENST00000298743.8 NM_002048 uc004aox.5 L13698 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101227.1 | |tss_id=hg_101227.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P54826 | ||
}} | }} | ||
Revision as of 18:34, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000298743.8 NM_002048 uc004aox.5 L13698 |
|---|---|
| Distance: | 308 |
| Num_trans: | 4 |
| All_trans: | ENST00000298743.8:308 NM_002048:308 uc004aox.5:308 L13698:308 |
TATA-Box annotation
| Distance to TSS: | -318 |
|---|---|
| Nearest PromoterID: | NM_002048 |
| Entrez ID: | 2619 |
| Nearest Unigene: | Hs.65029 |
| Nearest Refseq: | NM_002048 |
| Nearest Ensembl: | ENSG00000180447 |
| Gene Name: | growth arrest specific 1 |
| Gene Alias: | - |
| Gene Description: | growth arrest specific 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-30(GTATTTAAAGCC,+,0.00)" |
