Difference between revisions of "TSS:Hg 101255.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=565 |entrez_id=23552 |gc_percent=0.572139 |gene_alias=CCRK|CDCH|P42|PNQALRE |gene_description=cyclin dependent kinase 20 |gene_...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CDCH= | ||
| + | |P42= | ||
| + | |PNQALRE= | ||
| + | |all_trans=AY904367:-225 KU178572:-225 KU178573:-225 KU178574:-225 KU178575:-225 KU178576:-225 KU178577:-225 ENST00000375871.8:-266 uc004apu.4:-266 ENST00000605159.5:-284 uc022bjj.2:-284 BC002655:-284 AK298993:-302 ENST00000604175.5:-310 ENST00000605591.1:-310 uc064udg.1:-310 uc064udh.1:-310 AK296328:-310 AK075325:-312 AK294193:-312 ENST00000603475.1:-313 uc064ude.1:-313 AK226135:-313 ENST00000336654.9:-368 uc004apt.4:-368 AF035013:-458 ENST00000459720.5:-464 uc064udd.1:-464 AF113130:-464 ENST00000486228.7:-480 uc064udf.1:-480 AK291713:-480 BX647489:-488 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=-225 | ||
|distance_to_tss=565 | |distance_to_tss=565 | ||
| + | |end=87974221 | ||
|entrez_id=23552 | |entrez_id=23552 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=CCRK|CDCH|P42|PNQALRE | |gene_alias=CCRK|CDCH|P42|PNQALRE | ||
|gene_description=cyclin dependent kinase 20 | |gene_description=cyclin dependent kinase 20 | ||
| − | |gene_name=CDK20 | + | |gene_id=23552 |
| + | |gene_name=cyclin-dependent kinase 20 | ||
| + | |gene_source=HGNC:21420 | ||
| + | |gene_symbol=CDK20 | ||
| + | |gene_synonyms=p42 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21420 | ||
|nearest_ensembl=ENSG00000156345 | |nearest_ensembl=ENSG00000156345 | ||
|nearest_promoter_id=NM_001039803 | |nearest_promoter_id=NM_001039803 | ||
|nearest_refseq=NM_012119 | |nearest_refseq=NM_012119 | ||
|nearest_unigene=Hs.522274 | |nearest_unigene=Hs.522274 | ||
| + | |num_trans=33 | ||
| + | |species=human | ||
| + | |start=87974208 | ||
| + | |strand=- | ||
|tata_box="-56(GTTTTTAAAACC,+,0.00)" | |tata_box="-56(GTTTTTAAAACC,+,0.00)" | ||
| + | |transcript_name=AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101255.1 | |tss_id=hg_101255.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0S2Z535 A0A0S2Z552 A0A0S2Z557 A0A0S2Z562 A0A0S2Z566 | ||
}} | }} | ||
Revision as of 18:35, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 |
|---|---|
| Distance: | -225 |
| Num_trans: | 33 |
| All_trans: | AY904367:-225 KU178572:-225 KU178573:-225 KU178574:-225 KU178575:-225 KU178576:-225 KU178577:-225 ENST00000375871.8:-266 uc004apu.4:-266 ENST00000605159.5:-284 uc022bjj.2:-284 BC002655:-284 AK298993:-302 ENST00000604175.5:-310 ENST00000605591.1:-310 uc064udg.1:-310 uc064udh.1:-310 AK296328:-310 AK075325:-312 AK294193:-312 ENST00000603475.1:-313 uc064ude.1:-313 AK226135:-313 ENST00000336654.9:-368 uc004apt.4:-368 AF035013:-458 ENST00000459720.5:-464 uc064udd.1:-464 AF113130:-464 ENST00000486228.7:-480 uc064udf.1:-480 AK291713:-480 BX647489:-488 |
TATA-Box annotation
| Distance to TSS: | 565 |
|---|---|
| Nearest PromoterID: | NM_001039803 |
| Entrez ID: | 23552 |
| Nearest Unigene: | Hs.522274 |
| Nearest Refseq: | NM_012119 |
| Nearest Ensembl: | ENSG00000156345 |
| Gene Name: | cyclin-dependent kinase 20 |
| Gene Alias: | CCRK |
| Gene Description: | cyclin dependent kinase 20 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-56(GTTTTTAAAACC,+,0.00)" |
