Difference between revisions of "TSS:Hg 101256.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=538 |entrez_id=23552 |gc_percent=0.587065 |gene_alias=CCRK|CDCH|P42|PNQALRE |gene_description=cyclin dependent kinase 20 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CDCH= | ||
| + | |P42= | ||
| + | |PNQALRE= | ||
| + | |all_trans=AY904367:-186 KU178572:-186 KU178573:-186 KU178574:-186 KU178575:-186 KU178576:-186 KU178577:-186 ENST00000375871.8:-227 uc004apu.4:-227 ENST00000605159.5:-245 uc022bjj.2:-245 BC002655:-245 AK298993:-263 ENST00000604175.5:-271 ENST00000605591.1:-271 uc064udg.1:-271 uc064udh.1:-271 AK296328:-271 AK075325:-273 AK294193:-273 ENST00000603475.1:-274 uc064ude.1:-274 AK226135:-274 ENST00000336654.9:-329 uc004apt.4:-329 AF035013:-419 ENST00000459720.5:-425 uc064udd.1:-425 AF113130:-425 ENST00000486228.7:-441 uc064udf.1:-441 AK291713:-441 BX647489:-449 ENST00000325303.8:-492 uc004apr.4:-492 ENST00000375883.7:-493 uc004aps.4:-493 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=-186 | ||
|distance_to_tss=538 | |distance_to_tss=538 | ||
| + | |end=87974260 | ||
|entrez_id=23552 | |entrez_id=23552 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
|gene_alias=CCRK|CDCH|P42|PNQALRE | |gene_alias=CCRK|CDCH|P42|PNQALRE | ||
|gene_description=cyclin dependent kinase 20 | |gene_description=cyclin dependent kinase 20 | ||
| − | |gene_name=CDK20 | + | |gene_id=23552 |
| + | |gene_name=cyclin-dependent kinase 20 | ||
| + | |gene_source=HGNC:21420 | ||
| + | |gene_symbol=CDK20 | ||
| + | |gene_synonyms=p42 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21420 | ||
|nearest_ensembl=ENSG00000156345 | |nearest_ensembl=ENSG00000156345 | ||
|nearest_promoter_id=NM_001039803 | |nearest_promoter_id=NM_001039803 | ||
|nearest_refseq=NM_012119 | |nearest_refseq=NM_012119 | ||
|nearest_unigene=Hs.522274 | |nearest_unigene=Hs.522274 | ||
| + | |num_trans=37 | ||
| + | |species=human | ||
| + | |start=87974223 | ||
| + | |strand=- | ||
|tata_box="-29(GTTTTTAAAACC,+,0.00)" | |tata_box="-29(GTTTTTAAAACC,+,0.00)" | ||
| + | |transcript_name=AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 | ||
| + | |tss_classification=no | ||
|tss_id=hg_101256.1 | |tss_id=hg_101256.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0S2Z535 A0A0S2Z552 A0A0S2Z557 A0A0S2Z562 A0A0S2Z566 | ||
}} | }} | ||
Revision as of 18:35, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AY904367 KU178572 KU178573 KU178574 KU178575 KU178576 KU178577 |
|---|---|
| Distance: | -186 |
| Num_trans: | 37 |
| All_trans: | AY904367:-186 KU178572:-186 KU178573:-186 KU178574:-186 KU178575:-186 KU178576:-186 KU178577:-186 ENST00000375871.8:-227 uc004apu.4:-227 ENST00000605159.5:-245 uc022bjj.2:-245 BC002655:-245 AK298993:-263 ENST00000604175.5:-271 ENST00000605591.1:-271 uc064udg.1:-271 uc064udh.1:-271 AK296328:-271 AK075325:-273 AK294193:-273 ENST00000603475.1:-274 uc064ude.1:-274 AK226135:-274 ENST00000336654.9:-329 uc004apt.4:-329 AF035013:-419 ENST00000459720.5:-425 uc064udd.1:-425 AF113130:-425 ENST00000486228.7:-441 uc064udf.1:-441 AK291713:-441 BX647489:-449 ENST00000325303.8:-492 uc004apr.4:-492 ENST00000375883.7:-493 uc004aps.4:-493 |
TATA-Box annotation
| Distance to TSS: | 538 |
|---|---|
| Nearest PromoterID: | NM_001039803 |
| Entrez ID: | 23552 |
| Nearest Unigene: | Hs.522274 |
| Nearest Refseq: | NM_012119 |
| Nearest Ensembl: | ENSG00000156345 |
| Gene Name: | cyclin-dependent kinase 20 |
| Gene Alias: | CCRK |
| Gene Description: | cyclin dependent kinase 20 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-29(GTTTTTAAAACC,+,0.00)" |
