Difference between revisions of "TSS:Hg 101338.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-23 |entrez_id=101927873 |gc_percent=0.552239 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 1508 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000436671.1:1 uc064ufk.1:1 ENST00000425666.1:17 NR_109795:17 uc033daw.2:17 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=1 | ||
|distance_to_tss=-23 | |distance_to_tss=-23 | ||
| + | |end=90433518 | ||
|entrez_id=101927873 | |entrez_id=101927873 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1508 | |gene_description=long intergenic non-protein coding RNA 1508 | ||
| − | |gene_name=LINC01508 | + | |gene_id=101927873 |
| + | |gene_name=long intergenic non-protein coding RNA 1508 | ||
| + | |gene_source=HGNC:51190 | ||
| + | |gene_symbol=LINC01508 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51190 | ||
|nearest_ensembl=ENSG00000231107 | |nearest_ensembl=ENSG00000231107 | ||
|nearest_promoter_id=NR_109795 | |nearest_promoter_id=NR_109795 | ||
|nearest_refseq=NR_109795 | |nearest_refseq=NR_109795 | ||
|nearest_unigene=Hs.598482 | |nearest_unigene=Hs.598482 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=90433505 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000436671.1 uc064ufk.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101338.1 | |tss_id=hg_101338.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:39, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000436671.1 uc064ufk.1 |
|---|---|
| Distance: | 1 |
| Num_trans: | 5 |
| All_trans: | ENST00000436671.1:1 uc064ufk.1:1 ENST00000425666.1:17 NR_109795:17 uc033daw.2:17 |
TATA-Box annotation
| Distance to TSS: | -23 |
|---|---|
| Nearest PromoterID: | NR_109795 |
| Entrez ID: | 101927873 |
| Nearest Unigene: | Hs.598482 |
| Nearest Refseq: | NR_109795 |
| Nearest Ensembl: | ENSG00000231107 |
| Gene Name: | long intergenic non-protein coding RNA 1508 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1508 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
